RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 ATXN8OSP0DMR3 200 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ANXA8P13928 327 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 EEF1B2P24534 225 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 IST1P53990 364 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 CDH12P55289 794 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 GFERP55789 205 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ESRRGP62508 458 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 VLDLRP98155 873 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 EEF1A2Q05639 463 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 FOXD4Q12950 439 aaPredicted RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 PPP1R8Q12972 351 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 TOP3AQ13472 1001 aaPredicted RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 IL18R1Q13478 541 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 LARS2Q15031 903 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 CEBPEQ15744 281 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 SYPL1Q16563 259 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 MFSD4BQ5TF39 518 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 HES3Q5TGS1 186 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 CDC73Q6P1J9 531 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ZCCHC12Q6PEW1 402 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 TBPL2Q6SJ96 375 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 DEF8Q6ZN54 512 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 THAP5Q7Z6K1 395 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 KMT5CQ86Y97 462 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 PEX5LQ8IYB4 626 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 LGI4Q8N135 537 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 PIK3C3Q8NEB9 887 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 TSPAN14Q8NG11 270 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 OR5D16Q8NGK9 328 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 VANGL1Q8TAA9 524 aaPredicted RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 MIPOL1Q8TD10 442 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 NR4A3Q92570 626 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 NXPE2Q96DL1 559 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 PEX11GQ96HA9 241 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ZNF354BQ96LW1 612 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ZNF681Q96N22 645 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 TRNT1Q96Q11 434 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 DEPDC7Q96QD5 511 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ZNF300Q96RE9 604 aaPredicted RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 CSF3RQ99062 836 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 PIP5K1AQ99755 562 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 APOL4Q9BPW4 351 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 TREX2Q9BQ50 279 aaPredicted RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 PELOQ9BRX2 385 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 FNDC11Q9BVV2 318 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 BTBD2Q9BX70 525 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 TRIM4Q9C037 500 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 CHRNA10Q9GZZ6 450 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ADNPQ9H2P0 1102 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 TOR3AQ9H497 397 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 RIBC2Q9H4K1 309 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 VCX3AQ9NNX9 186 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 ADAP2Q9NPF8 381 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 THSD1Q9NS62 852 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 FAM118AQ9NWS6 357 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 NDUFA13Q9P0J0 144 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 HCN3Q9P1Z3 774 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 BLOC1S6Q9UL45 172 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 IFT52Q9Y366 437 aa8.7□□□□□ -1.02
SS18-220ENST00000582092 MRPS2Q9Y399 296 aaKnown RBP8.7□□□□□ -1.02
SS18-220ENST00000582092 DNAH14Q0VDD8 3507 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 A0A087WV62 115 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 A0A087WXM4 84 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 IGHV5-51A0A0C4DH38 117 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 MYOCOSA0A1B0GUC4 107 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 LOC100130705A0A1B0GUX0 176 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 H0YIG0 161 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 UPK1AO00322 258 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CYR61O00622 381 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CTNSO60931 367 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 DNAJB5O75953 348 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CCNB2O95067 398 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 MFN2O95140 757 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 H6PDO95479 791 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 AK1P00568 194 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 SEMG1P04279 462 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 ATP1B1P05026 303 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 PNLIPP16233 465 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 PTGER1P34995 402 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 YAP1P46937 504 aaKnown RBP8.69□□□□□ -1.02
SS18-220ENST00000582092 KCNJ5P48544 419 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 EMP3P54852 163 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 PCBP3P57721 371 aaKnown RBP8.69□□□□□ -1.02
SS18-220ENST00000582092 ZNF155Q12901 538 aaPredicted RBP8.69□□□□□ -1.02
SS18-220ENST00000582092 SERTAD2Q14140 314 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 LTB4RQ15722 352 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 PRTGQ2VWP7 1150 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CYP27C1Q4G0S4 372 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 ZNF311Q5JNZ3 666 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 YOD1Q5VVQ6 348 aaPredicted RBP8.69□□□□□ -1.02
SS18-220ENST00000582092 WDR74Q6RFH5 385 aaPredicted RBP8.69□□□□□ -1.02
SS18-220ENST00000582092 RRM2BQ7LG56 351 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 PRSS41Q7RTY9 318 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 GALNT5Q7Z7M9 940 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CARM1Q86X55 608 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CHERPQ8IWX8 916 aaKnown RBP8.69□□□□□ -1.02
SS18-220ENST00000582092 SLC35F3Q8IY50 421 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 COX18Q8N8Q8 333 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 CDRT4Q8N9R6 151 aa8.69□□□□□ -1.02
SS18-220ENST00000582092 OR7G2Q8NG99 324 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms