RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PSPHP78330 225 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 MRPS35P82673 323 aaKnown RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 ZNF844Q08AG5 666 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SLC10A1Q14973 349 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 EXOSC7Q15024 291 aaKnown RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 LTB4RQ15722 352 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 NNATQ16517 81 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 ZNF628Q5EBL2 1059 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SH2D4BQ5SQS7 431 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 CEP85LQ5SZL2 805 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 FAM219BQ5XKK7 198 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 KANK2Q63ZY3 851 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 TMEM211Q6ICI0 200 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 NOXRED1Q6NXP6 359 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 FAM180BQ6P0A1 224 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 CD163Q86VB7 1156 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 PRR22Q8IZ63 422 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 CLYBLQ8N0X4 340 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 TMEM251Q8N6I4 163 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 OR52N2Q8NGI0 321 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 OR9A2Q8NGT5 310 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 FAM57AQ8TBR7 257 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SARAFQ96BY9 339 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 DTNBP1Q96EV8 351 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 CNRIP1Q96F85 164 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 LCORQ96JN0 433 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 ZNF681Q96N22 645 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SECISBP2Q96T21 854 aaKnown RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 MECRQ9BV79 373 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 STMN4Q9H169 189 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 TP63Q9H3D4 680 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 METTL7AQ9H8H3 244 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 ZFP64Q9NPA5 681 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 MYNNQ9NPC7 610 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 C1orf109Q9NX04 203 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 TUBA8Q9NY65 449 aaPredicted RBP7.45□□□□□ -1.22
VPS53-214ENST00000572607 COQ3Q9NZJ6 369 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 SLC17A7Q9P2U7 560 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 RAB21Q9UL25 225 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 MEMO1Q9Y316 297 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 TMED5Q9Y3A6 229 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 TRAF6Q9Y4K3 522 aa7.45□□□□□ -1.22
VPS53-214ENST00000572607 DIDO1Q9BTC0 2240 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 ANKRD33BA6NCL7 494 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 OR14I1A6ND48 311 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 TMEM114B3SHH9 223 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 NPIPA2E9PIF3 369 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 E9PLN8 166 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 NPIPA3F8WFD2 350 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 BCKDKO14874 412 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 PPM1BO75688 479 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 GLSO94925 669 aaPredicted RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 HSPA4LO95757 839 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 CBX7O95931 251 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 BPGMP07738 259 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 BMP4P12644 408 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 PCSK2P16519 638 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 DRD5P21918 477 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 GCKP35557 465 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 MAGEA5P43359 124 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 PPICP45877 212 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 FBXW4P57775 412 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 RPL38P63173 70 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 MRPS22P82650 360 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 MGAT2Q10469 447 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 ZNF155Q12901 538 aaPredicted RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 ART3Q13508 389 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 HYAL4Q2M3T9 481 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 GALNTL6Q49A17 601 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 TRMT12Q53H54 448 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 ARL13AQ5H913 290 aaPredicted RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 XKRXQ6PP77 449 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 TMEM64Q6YI46 380 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 RNF165Q6ZSG1 346 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 NUP54Q7Z3B4 507 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 DOLPP1Q86YN1 238 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 NUDCD3Q8IVD9 361 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 SLC34A3Q8N130 599 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 ZFP28Q8NHY6 868 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 SPPL2AQ8TCT8 520 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 AGR3Q8TD06 166 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 PHF10Q8WUB8 498 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 TWIST2Q8WVJ9 160 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 KAT2AQ92830 837 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 ADIPOR1Q96A54 375 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 CTHRC1Q96CG8 243 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 TMCO6Q96DC7 493 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 OMA1Q96E52 524 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 C11orf24Q96F05 449 aaPredicted RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 PPP3R2Q96LZ3 170 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 CCT7Q99832 543 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 VKORC1Q9BQB6 163 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 NXF5Q9H1B4 397 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 ZDHHC11Q9H8X9 412 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 SH2D2AQ9NP31 389 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 SSU72Q9NP77 194 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 DDX18Q9NVP1 670 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 QPCTLQ9NXS2 382 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 TAS2R9Q9NYW1 312 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 KLRF1Q9NZS2 232 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms