RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TMPRSS11AQ6ZMR5 421 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 OR2L3Q8NG85 312 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 SLC25A46Q96AG3 418 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 SARGQ9BW04 601 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 SAP130Q9H0E3 1048 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 GPR55Q9Y2T6 319 aaPredicted RBP21.4■■□□□ 1.02
VPS53-211ENST00000571805 A0A1W2PP55 124 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 GUCY1B2O75343 617 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 CDRT1O95170 752 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 ACP2P11117 423 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 F3P13726 295 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 CERS1P27544 350 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 RUNX3Q13761 415 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 KRT33BQ14525 404 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 VITQ6UXI7 678 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 OR8D4Q8NGM9 314 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 NELL2Q99435 816 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 ARHGDIGQ99819 225 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 HOXD1Q9GZZ0 328 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 TPK1Q9H3S4 243 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 ANKRA2Q9H9E1 313 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 POLMQ9NP87 494 aaPredicted RBP21.4■■□□□ 1.02
VPS53-211ENST00000571805 SPHK1Q9NYA1 384 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 CHST2Q9Y4C5 530 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 SYT5O00445 386 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 EMC8O43402 210 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 CYP7B1O75881 506 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 MSL3P1P0C860 447 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 CSNK2A2P19784 350 aaPredicted RBP21.39■■□□□ 1.02
VPS53-211ENST00000571805 ARFIP1P53367 373 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 ABATP80404 500 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 CHRNEQ04844 493 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 ZNF311Q5JNZ3 666 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 SCAIQ8N9R8 606 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 SETD6Q8TBK2 473 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 PHOSPHO2Q8TCD6 241 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 GNPDA2Q8TDQ7 276 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 TM9SF4Q92544 642 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 TRMT61BQ9BVS5 477 aaKnown RBP21.39■■□□□ 1.02
VPS53-211ENST00000571805 OBP2AQ9NY56 170 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 APOBEC3BQ9UH17 382 aaKnown RBP21.39■■□□□ 1.02
VPS53-211ENST00000571805 ENTPD4Q9Y227 616 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 PCDHGA4Q9Y5G9 962 aa21.39■■□□□ 1.02
VPS53-211ENST00000571805 PRODHO43272 600 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 IL1AP01583 271 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 WNT4P56705 351 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 MXD1Q05195 221 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 RUNX1T1Q06455 604 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 RAB40BQ12829 278 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 CEBPEQ15744 281 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 SLC27A4Q6P1M0 643 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 VRK2Q86Y07 508 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 TMCO6Q96DC7 493 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 RNFT2Q96EX2 444 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 ZNF681Q96N22 645 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 TRPV4Q9HBA0 871 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 TMEM165Q9HC07 324 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 SEMA4GQ9NTN9 838 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 SLC17A4Q9Y2C5 497 aa21.39■■□□□ 1.01
VPS53-211ENST00000571805 SPIN1Q9Y657 262 aaPredicted RBP21.39■■□□□ 1.01
VPS53-211ENST00000571805 PROM1O43490 865 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 FRS3O43559 492 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 NTN1O95631 604 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 TAS2R41P59536 307 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 RAB8AP61006 207 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 BAK1Q16611 211 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 OR2G6Q5TZ20 316 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 AGAP6Q5VW22 663 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 NRARPQ7Z6K4 114 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 TMEM145Q8NBT3 493 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 NUP43Q8NFH3 380 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 SLC35B4Q969S0 331 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 TMEM203Q969S6 136 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 ELP4Q96EB1 424 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 AGAP4Q96P64 663 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 ITGB1BP2Q9UKP3 347 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 SF3B6Q9Y3B4 125 aaKnown RBP21.38■■□□□ 1.01
VPS53-211ENST00000571805 CMAHPQ9Y471 501 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 TMEM129A0AVI4 362 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 STK25O00506 426 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 APOL3O95236 402 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 CLEC2LP0C7M8 214 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 C5AR1P21730 350 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 MC3RP41968 323 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 PRR5P85299 388 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 TSPAN31Q12999 210 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 ENPP2Q13822 863 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 C22orf42Q6IC83 251 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 SLC36A4Q6YBV0 504 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 GET4Q7L5D6 327 aaPredicted RBP21.38■■□□□ 1.01
VPS53-211ENST00000571805 OR9A2Q8NGT5 310 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 TEX47Q8TBZ9 253 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 SLC9A6Q92581 669 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 DIO2Q92813 273 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 CTRCQ99895 268 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 SRRQ9GZT4 340 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 PLEKHB1Q9UF11 243 aaPredicted RBP21.38■■□□□ 1.01
VPS53-211ENST00000571805 GPR52Q9Y2T5 361 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 PCDHGB2Q9Y5G2 931 aa21.38■■□□□ 1.01
VPS53-211ENST00000571805 FAM170BA6NMN3 283 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms