RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 OVOL3O00110 214 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 LMX1BO60663 402 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 ICOSLGO75144 302 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 BANF1O75531 89 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 PLGP00747 810 aaPredicted RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 IGHV4-39P01824 125 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 HIST1H1TP22492 207 aaPredicted RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 CNTFP26441 200 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 CRABP2P29373 138 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 GDF5P43026 501 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 SLC6A12P48065 614 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 RAP1GDS1P52306 607 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 NUDT6P53370 316 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 IGLV3-21P80748 117 aaPredicted RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 FUT7Q11130 342 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 SLAMF1Q13291 335 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 SQLEQ14534 574 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 FASTKD3Q14CZ7 662 aaKnown RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 ZKSCAN8Q15776 578 aaPredicted RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 SPRED3Q2MJR0 410 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 TMEM35AQ53FP2 167 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 PAGE2BQ5JRK9 111 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 RBM20Q5T481 1227 aaKnown RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 METTL2BQ6P1Q9 378 aaKnown RBP9.99□□□□□ -0.81
VPS53-207ENST00000570510 CLEC2AQ6UVW9 174 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 C22orf34Q6ZV56 151 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 GPR180Q86V85 440 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 ANKMY2Q8IV38 441 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 IFT20Q8IY31 132 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 SNX31Q8N9S9 440 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 CTHRC1Q96CG8 243 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 FMO2Q99518 471 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 RBBP8Q99708 897 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 OR2B2Q9GZK3 357 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 WDR41Q9HAD4 459 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 GALNT9Q9HCQ5 603 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 NGBQ9NPG2 151 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 PHF11Q9UIL8 331 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 RNF115Q9Y4L5 304 aa9.99□□□□□ -0.81
VPS53-207ENST00000570510 NCF1BA6NI72 391 aaPredicted RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 NCF1CA8MVU1 366 aaPredicted RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 SAP18O00422 153 aaKnown RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 KCNAB3O43448 404 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 WISP3O95389 354 aaPredicted RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 GPR75O95800 540 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PGRP06401 933 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 THBDP07204 575 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 CD3EP07766 207 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ABCB1P08183 1280 aaPredicted RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 SOD3P08294 240 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 RHOXF2BP0C7M4 288 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PCNAP12004 261 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PEPDP12955 493 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 NCF1P14598 390 aaPredicted RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 STMN1P16949 149 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ZNF708P17019 499 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ABCD3P28288 659 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 SSTR1P30872 391 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 SSTR4P31391 388 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 GFRA1P56159 465 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 CLDN18P56856 261 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 DSCR9P59020 149 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 GPX6P59796 221 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 SNTA1Q13424 505 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 LAPTM5Q13571 262 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 NRF1Q16656 503 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 UBAP2Q5T6F2 1119 aaKnown RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 ZNF793Q6ZN11 406 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 NUP54Q7Z3B4 507 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PPM1NQ8N819 430 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PTCD3Q96EY7 689 aaKnown RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 UBXN10Q96LJ8 280 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ADAD1Q96M93 576 aaKnown RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 EFCAB11Q9BUY7 163 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PINK1Q9BXM7 581 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PRRG4Q9BZD6 226 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ACTR6Q9GZN1 396 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ACSS3Q9H6R3 686 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 ESRP2Q9H6T0 727 aaKnown RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 CNOT10Q9H9A5 744 aaKnown RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 CHODLQ9H9P2 273 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 L2HGDHQ9H9P8 463 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 PPCSQ9HAB8 311 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 FAIMQ9NVQ4 179 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 GPRC5BQ9NZH0 403 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 HEY2Q9UBP5 337 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 KCNS2Q9ULS6 477 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 EMC9Q9Y3B6 208 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 OARD1Q9Y530 152 aa9.98□□□□□ -0.81
VPS53-207ENST00000570510 MAGED1Q9Y5V3 778 aaPredicted RBP9.98□□□□□ -0.81
VPS53-207ENST00000570510 RAI1Q7Z5J4 1906 aaPredicted RBP9.97□□□□□ -0.81
VPS53-207ENST00000570510 NPEPPSL1A6NEC2 478 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 GLOD5A6NK44 160 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 HCRTR2O43614 444 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 PPM1BO75688 479 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 SIX3O95343 332 aaPredicted RBP9.97□□□□□ -0.81
VPS53-207ENST00000570510 TGFB1P01137 390 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 CGAP01215 116 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 ABHD2P08910 425 aa9.97□□□□□ -0.81
VPS53-207ENST00000570510 SRD5A2P31213 254 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms