RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MSI2Q96DH6 328 aaKnown RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 WDR34Q96EX3 536 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 PTCD3Q96EY7 689 aaKnown RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 EFCAB11Q9BUY7 163 aa16.15■□□□□ 0.18
CLK3-227ENST00000570296 STMN4Q9H169 189 aaPredicted RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 IARS2Q9NSE4 1012 aaKnown RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 CISD1Q9NZ45 108 aaKnown RBP16.15■□□□□ 0.18
CLK3-227ENST00000570296 EFCAB8A8MWE9 144 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 BSPH1Q075Z2 132 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 CTU2Q2VPK5 515 aaKnown RBP16.14■□□□□ 0.17
CLK3-227ENST00000570296 STK32CQ86UX6 486 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 GALNT12Q8IXK2 581 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 SYCE1Q8N0S2 351 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 OR7G1Q8NGA0 311 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 OMA1Q96E52 524 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 CACNG6Q9BXT2 260 aa16.14■□□□□ 0.17
CLK3-227ENST00000570296 A0A0A6YYJ9 748 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 SLCO1B7G3V0H7 640 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 CLGNO14967 610 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 ACOX3O15254 700 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 UGT2B11O75310 529 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 PRKRAO75569 313 aaKnown RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 AQP8O94778 261 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 CCDC175P0C221 793 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 MLNP12872 115 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 TCEA1P23193 301 aaKnown RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 ADH6P28332 368 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 GABRB3P28472 473 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 MAGEA6P43360 314 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 SUCLG1P53597 346 aaKnown RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 CTBP2P56545 445 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 PLCXD2Q0VAA5 305 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 RAB35Q15286 201 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 PDCD2Q16342 344 aaPredicted RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 CR1LQ2VPA4 569 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 SEL1L2Q5TEA6 688 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 OR4C11Q6IEV9 310 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 DRICH1Q6PGQ1 229 aaPredicted RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 ZNF473Q8WTR7 871 aaKnown RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 GFM2Q969S9 779 aaKnown RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 HES6Q96HZ4 224 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 GMPPAQ96IJ6 420 aaPredicted RBP16.13■□□□□ 0.17
CLK3-227ENST00000570296 HDHD5Q9BXW7 423 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 MOCS1Q9NZB8 636 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 OARD1Q9Y530 152 aa16.13■□□□□ 0.17
CLK3-227ENST00000570296 H0YC42 278 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 LINC01387J3KSC0 135 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 SEC14L5O43304 696 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 PRAMEF4O60810 478 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 SS18L1O75177 396 aaPredicted RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 PLGP00747 810 aaPredicted RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 CASP2P42575 452 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 TPD52P55327 224 aaPredicted RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 HNRNPH2P55795 449 aaKnown RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 RPS3AP61247 264 aaKnown RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 ACTG1P63261 375 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 LAPTM5Q13571 262 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 DOC2AQ14183 400 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 NNATQ16517 81 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 CCNG2Q16589 344 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 HIST2H2ACQ16777 129 aaPredicted RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 C18orf21Q32NC0 220 aaPredicted RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 PAGE2BQ5JRK9 111 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 PRAMEF9Q5VWM5 478 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 HIST2H2AA3Q6FI13 130 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 GSTA5Q7RTV2 222 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 ZCCHC7Q8N3Z6 543 aaKnown RBP16.12■□□□□ 0.17
CLK3-227ENST00000570296 METTL25Q8N6Q8 603 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 HSD17B8Q92506 261 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 TMCO6Q96DC7 493 aa16.12■□□□□ 0.17
CLK3-227ENST00000570296 VWFP04275 2813 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 CT62P0C5K7 136 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 CREB1P16220 341 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 CD22P20273 847 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 PGGT1BP53609 377 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 DSCR4P56555 118 aaPredicted RBP16.11■□□□□ 0.17
CLK3-227ENST00000570296 TAB1Q15750 504 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 KHDRBS2Q5VWX1 349 aaKnown RBP16.11■□□□□ 0.17
CLK3-227ENST00000570296 C11orf71Q6IPW1 123 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 EXOC3L1Q86VI1 746 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 PIWIL2Q8TC59 973 aaKnown RBP16.11■□□□□ 0.17
CLK3-227ENST00000570296 SORBS1Q9BX66 1292 aaKnown RBP16.11■□□□□ 0.17
CLK3-227ENST00000570296 LACRTQ9GZZ8 138 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 XAB2Q9HCS7 855 aaKnown RBP16.11■□□□□ 0.17
CLK3-227ENST00000570296 CFL2Q9Y281 166 aa16.11■□□□□ 0.17
CLK3-227ENST00000570296 NPEPPSL1A6NEC2 478 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 DPRXA6NFQ7 191 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 WASHC1A8K0Z3 465 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 SAP18O00422 153 aaKnown RBP16.1■□□□□ 0.17
CLK3-227ENST00000570296 NR2F6P10588 404 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 CDH11P55287 796 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 KIF5AQ12840 1032 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 C6orf163Q5TEZ5 329 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 FIGNL1Q6PIW4 674 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 ATG4DQ86TL0 474 aaPredicted RBP16.1■□□□□ 0.17
CLK3-227ENST00000570296 BANPQ8N9N5 519 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 SEMA6DQ8NFY4 1073 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 CMTM7Q96FZ5 175 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 USB1Q9BQ65 265 aaKnown RBP16.1■□□□□ 0.17
CLK3-227ENST00000570296 ZNF696Q9H7X3 374 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms