RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HMGN2P05204 90 aaKnown RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 FAM87AP0C7U9 286 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ICAM2P13598 275 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 DRD5P21918 477 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ITGA3P26006 1051 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 TRHRP34981 398 aaPredicted RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 PPICP45877 212 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 GZMMP51124 257 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 POLE2P56282 527 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 KCNK10P57789 538 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 MAPKAPK3Q16644 382 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 DUSP5Q16690 384 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 PIGGQ5H8A4 983 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 COQ5Q5HYK3 327 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 GKAP1Q5VSY0 366 aaPredicted RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 AP1ARQ63HQ0 302 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 REP15Q6BDI9 236 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 IGFL3Q6UXB1 125 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ZAR1Q86SH2 424 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 RPS19BP1Q86WX3 136 aaKnown RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 BEST3Q8N1M1 668 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 CCDC197Q8NCU1 140 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 NUP43Q8NFH3 380 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 OR4A15Q8NGL6 344 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 FBXO30Q8TB52 745 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 FAM110BQ8TC76 370 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 OTUB1Q96FW1 271 aaPredicted RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 SLC35A4Q96G79 324 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 MAGED4Q96JG8 741 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ART5Q96L15 291 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 MS4A4EQ96PG1 132 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 PANX1Q96RD7 426 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 RASL10BQ96S79 203 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ZBTB18Q99592 522 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 CPPED1Q9BRF8 314 aaPredicted RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 GPATCH1Q9BRR8 931 aaKnown RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 SLC39A3Q9BRY0 314 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 CDCP1Q9H5V8 836 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 SH2D2AQ9NP31 389 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 ZCCHC3Q9NUD5 404 aaKnown RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 DDX18Q9NVP1 670 aaKnown RBP8.58□□□□□ -1.04
VPS35-211ENST00000569950 GPR83Q9NYM4 423 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 HRH3Q9Y5N1 445 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 SHANK1Q9Y566 2161 aa8.58□□□□□ -1.04
VPS35-211ENST00000569950 MED12Q93074 2177 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 RNF103-CHMP3A0A140T963 221 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 LOC100653049A0A140TA62 436 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 C2orf92A0A1B0GVN3 265 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 FRG2CA6NGY1 282 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 WWP2O00308 870 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 HMGN4O00479 90 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 NDUFAB1O14561 156 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 RFXANKO14593 260 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 TSPAN2O60636 221 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 ERN1O75460 977 aaKnown RBP8.57□□□□□ -1.04
VPS35-211ENST00000569950 ITGA10O75578 1167 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 KRT34O76011 436 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 OR6B1O95007 311 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 BMP2P12643 396 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 UQCRC2P22695 453 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 SOX3P41225 446 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 CASP9P55211 416 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 LRRC74AQ0VAA2 488 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 MFAP5Q13361 173 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 LASP1Q14847 261 aaKnown RBP8.57□□□□□ -1.04
VPS35-211ENST00000569950 NNATQ16517 81 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 ZNF791Q3KP31 576 aaPredicted RBP8.57□□□□□ -1.04
VPS35-211ENST00000569950 RUNDC3AQ59EK9 446 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 CRB2Q5IJ48 1285 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 HEPHL1Q6MZM0 1159 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 C6orf89Q6UWU4 347 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 OLIG3Q7RTU3 272 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 C6orf120Q7Z4R8 191 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 MTERF4Q7Z6M4 381 aaKnown RBP8.57□□□□□ -1.04
VPS35-211ENST00000569950 HORMAD2Q8N7B1 307 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 MDS2Q8NDY4 140 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 OR56A1Q8NGH5 318 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 OR5D16Q8NGK9 328 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 RP9Q8TA86 221 aaKnown RBP8.57□□□□□ -1.04
VPS35-211ENST00000569950 HGDQ93099 445 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 TP53INP1Q96A56 240 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 RCN3Q96D15 328 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 ABHD17AQ96GS6 310 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 ITCHQ96J02 903 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 VPS50Q96JG6 964 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 GAL3ST4Q96RP7 486 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 SLC35A5Q9BS91 424 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 YIPF4Q9BSR8 244 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 SLC25A23Q9BV35 468 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 DEFB126Q9BYW3 111 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 RNF32Q9H0A6 362 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 TPT1P8Q9HAU6 139 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 PROK2Q9HC23 129 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 EQTNQ9NQ60 294 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 PLA2G3Q9NZ20 509 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 GMPR2Q9P2T1 348 aaKnown RBP8.57□□□□□ -1.04
VPS35-211ENST00000569950 COPS7AQ9UBW8 275 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 BCAP29Q9UHQ4 241 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 NDUFAF1Q9Y375 327 aa8.57□□□□□ -1.04
VPS35-211ENST00000569950 SNX8Q9Y5X2 465 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms