RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TBCEQ15813 527 aaPredicted RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 TMEM35AQ53FP2 167 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 GCNT6Q5T4J0 391 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 LIPKQ5VXJ0 399 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 LIN54Q6MZP7 749 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 MBOAT1Q6ZNC8 495 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 DET1Q7L5Y6 550 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 DENND6AQ8IWF6 608 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 BTN2A2Q8WVV5 523 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 SLC39A8Q9C0K1 460 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 TOLLIPQ9H0E2 274 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 TMPRSS5Q9H3S3 457 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 GPR83Q9NYM4 423 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 EXO1Q9UQ84 846 aaKnown RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 C5orf42Q9H799 3197 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 FAM170BA6NMN3 283 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 ADAMDEC1O15204 470 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 DLX3O60479 287 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 KRT33AO76009 404 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 ADHFE1Q8IWW8 467 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 MYEOVQ96EZ4 313 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 C5orf34Q96MH7 638 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 C19orf12Q9NSK7 152 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 SLC2A6Q9UGQ3 507 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 ZNF225Q9UK10 706 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 TET1Q8NFU7 2136 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 MANSC4A6NHS7 340 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 B4E171 279 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 QSOX1O00391 747 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 MMP2P08253 660 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 SLC19A1P41440 591 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 GPR15P49685 360 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 GPNMBQ14956 572 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 P2RY14Q15391 338 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 ZNHIT3Q15649 155 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 MPPED2Q15777 294 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 KCNA10Q16322 511 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 CLLU1OSQ5K130 101 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 C1orf185Q5T7R7 199 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 TMEM107Q6UX40 140 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 LDB1Q86U70 411 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 DTWD1Q8N5C7 304 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 TTC9BQ8N6N2 239 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 CNOT9Q92600 299 aaKnown RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 SUSD3Q96L08 255 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 MS4A4EQ96PG1 132 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 ENKD1Q9H0I2 346 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 DLL4Q9NR61 685 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 TREX1Q9NSU2 369 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 TMEFF2Q9UIK5 374 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 SCP2D1Q9UJQ7 156 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 NDRG4Q9ULP0 352 aaKnown RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 GPR45Q9Y5Y3 372 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 TMEM88BA6NKF7 163 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 PRR23D1E9PI22 279 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 DIRAS3O95661 229 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 HOXC4P09017 264 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 PRR23D2P0DMB1 279 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 ELAVL2Q12926 359 aaKnown RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 OR5M10Q6IEU7 315 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 MIER2Q8N344 545 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 FSTL5Q8N475 847 aaPredicted RBP10.26□□□□□ -0.77
CLK3-226ENST00000569406 OR5K1Q8NHB7 308 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 FCRL1Q96LA6 429 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 GPR22Q99680 433 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 MGLLQ99685 303 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 SARGQ9BW04 601 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 GAB2Q9UQC2 676 aa10.26□□□□□ -0.77
CLK3-226ENST00000569406 A0A1B0GW55 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 TSTD3H0UI37 97 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 RP2O75695 350 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4L2P0CJ85 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4L3P0CJ86 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4L4P0CJ87 422 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4L5P0CJ88 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4L6P0CJ89 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4L7P0CJ90 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 EFNA1P20827 205 aaPredicted RBP10.25□□□□□ -0.77
CLK3-226ENST00000569406 S100A7P31151 101 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 CSF2RBP32927 897 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 ACLYP53396 1101 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 TNFRSF9Q07011 255 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 ZC3HAV1LQ96H79 300 aaKnown RBP10.25□□□□□ -0.77
CLK3-226ENST00000569406 PINK1Q9BXM7 581 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 TRIM54Q9BYV2 358 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DUX4Q9UBX2 424 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 TP53TG5Q9Y2B4 290 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 KLK4Q9Y5K2 254 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 HS3ST4Q9Y661 456 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 FAM95CA0A1B0GW59 222 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 ERI2A8K979 691 aaKnown RBP10.25□□□□□ -0.77
CLK3-226ENST00000569406 UGDHO60701 494 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 VIPP01282 170 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 HLA-DQB2P05538 268 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 THPOP40225 353 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 VHLLQ6RSH7 139 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 DEF8Q6ZN54 512 aa10.25□□□□□ -0.77
CLK3-226ENST00000569406 ZNF551Q7Z340 670 aaPredicted RBP10.25□□□□□ -0.77
CLK3-226ENST00000569406 PPHLN1Q8NEY8 458 aaKnown RBP10.25□□□□□ -0.77
CLK3-226ENST00000569406 DMBX1Q8NFW5 382 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms