RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 S100A3P33764 101 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 FBXW4P57775 412 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 PSG6Q00889 435 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 INPP5JQ15735 1006 aaPredicted RBP18.01■□□□□ 0.47
CLN3-225ENST00000566824 MAPKAPK3Q16644 382 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 OPN5Q6U736 354 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 SLC44A2Q8IWA5 706 aaPredicted RBP18.01■□□□□ 0.47
CLN3-225ENST00000566824 SLC15A4Q8N697 577 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 C17orf47Q8NEP4 570 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 OR10G3Q8NGC4 313 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 OR5AK3PQ8NH89 298 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 FBXO30Q8TB52 745 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 SPACA9Q96E40 222 aaPredicted RBP18.01■□□□□ 0.47
CLN3-225ENST00000566824 TMEM120AQ9BXJ8 343 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 SH2D2AQ9NP31 389 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 TAS2R9Q9NYW1 312 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 ZIM2Q9NZV7 527 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 CFL2Q9Y281 166 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 SNX8Q9Y5X2 465 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 SVILO95425 2214 aa18.01■□□□□ 0.47
CLN3-225ENST00000566824 CFLARO15519 480 aa18■□□□□ 0.47
CLN3-225ENST00000566824 EMC8O43402 210 aa18■□□□□ 0.47
CLN3-225ENST00000566824 SLC28A2O43868 658 aa18■□□□□ 0.47
CLN3-225ENST00000566824 COQ9O75208 318 aa18■□□□□ 0.47
CLN3-225ENST00000566824 CPSF4O95639 269 aaKnown RBP18■□□□□ 0.47
CLN3-225ENST00000566824 IFI6P09912 130 aa18■□□□□ 0.47
CLN3-225ENST00000566824 ACP2P11117 423 aa18■□□□□ 0.47
CLN3-225ENST00000566824 CD46P15529 392 aa18■□□□□ 0.47
CLN3-225ENST00000566824 MAP3K8P41279 467 aa18■□□□□ 0.47
CLN3-225ENST00000566824 GPR85P60893 370 aa18■□□□□ 0.47
CLN3-225ENST00000566824 TLE1Q04724 770 aa18■□□□□ 0.47
CLN3-225ENST00000566824 SZRD1Q7Z422 152 aa18■□□□□ 0.47
CLN3-225ENST00000566824 FUNDC1Q8IVP5 155 aa18■□□□□ 0.47
CLN3-225ENST00000566824 MIER2Q8N344 545 aa18■□□□□ 0.47
CLN3-225ENST00000566824 C5orf34Q96MH7 638 aa18■□□□□ 0.47
CLN3-225ENST00000566824 YIPF4Q9BSR8 244 aa18■□□□□ 0.47
CLN3-225ENST00000566824 INPP5KQ9BT40 448 aa18■□□□□ 0.47
CLN3-225ENST00000566824 ASF1BQ9NVP2 202 aa18■□□□□ 0.47
CLN3-225ENST00000566824 MAPRE3Q9UPY8 281 aa18■□□□□ 0.47
CLN3-225ENST00000566824 NCKAP5O14513 1909 aa18■□□□□ 0.47
CLN3-225ENST00000566824 PRSS51A0A1B0GVH4 220 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 GXYLT2A0PJZ3 443 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 FRG2CA6NGY1 282 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 RNASET2O00584 256 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 TO15178 435 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 DDX5P17844 614 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 RFC3P40938 356 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 CDKN2CP42773 168 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 CCT3P49368 545 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 SEC24CP53992 1094 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 IGFBP7Q16270 282 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 EXOSC6Q5RKV6 272 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 BICRALQ6AI39 1079 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 RPUSD3Q6P087 351 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 RTL4Q6ZR62 310 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 SULF2Q8IWU5 870 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 GPALPP1Q8IXQ4 340 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 TAGAPQ8N103 731 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 NATD1Q8N6N6 113 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 PSD4Q8NDX1 1056 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 FAM13CQ8NE31 585 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 OR4A15Q8NGL6 344 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 STON2Q8WXE9 905 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 HOXB13Q92826 284 aaPredicted RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 TMBIM1Q969X1 311 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 VPS33AQ96AX1 596 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 OMA1Q96E52 524 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 RILPQ96NA2 401 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 LMF2Q9BU23 707 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 ZNF385DQ9H6B1 395 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 PROK2Q9HC23 129 aa17.99■□□□□ 0.47
CLN3-225ENST00000566824 ZCCHC3Q9NUD5 404 aaKnown RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 CHCHD2Q9Y6H1 151 aaPredicted RBP17.99■□□□□ 0.47
CLN3-225ENST00000566824 CDK2AP1O14519 115 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PGRP06401 933 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PIGAP37287 484 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 MRPL19P49406 292 aaKnown RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 POLR2JP52435 117 aaKnown RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 DCAF7P61962 342 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 GAB1Q13480 694 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 NTRK2Q16620 822 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 RNFT1Q5M7Z0 435 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 MFSD12Q6NUT3 480 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 CPSF7Q8N684 471 aaKnown RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 HORMAD2Q8N7B1 307 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SLC16A11Q8NCK7 471 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 CPT1CQ8TCG5 803 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 GRHL3Q8TE85 626 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PIK3R3Q92569 461 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 HGDQ93099 445 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 TMEM125Q96AQ2 219 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 HSPBAP1Q96EW2 488 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 OR52E6Q96RD3 313 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 ZBTB18Q99592 522 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SERHL2Q9H4I8 314 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 C3orf14Q9HBI5 128 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SERHLQ9NQF3 203 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SLC6A13Q9NSD5 602 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 GPATCH2Q9NW75 528 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms