RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HAS2Q92819 552 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 HOXB13Q92826 284 aaPredicted RBP20.11■□□□□ 0.81
SNX1-210ENST00000560260 TP53INP1Q96A56 240 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 OTUB1Q96FW1 271 aaPredicted RBP20.11■□□□□ 0.81
SNX1-210ENST00000560260 LCORQ96JN0 433 aaPredicted RBP20.11■□□□□ 0.81
SNX1-210ENST00000560260 CCT8L2Q96SF2 557 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 LMF2Q9BU23 707 aaKnown RBP20.11■□□□□ 0.81
SNX1-210ENST00000560260 MFRPQ9BY79 579 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 SERHL2Q9H4I8 314 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 ARMCX1Q9P291 453 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 RALYQ9UKM9 306 aaKnown RBP20.11■□□□□ 0.81
SNX1-210ENST00000560260 EXPH5Q8NEV8 1989 aa20.11■□□□□ 0.81
SNX1-210ENST00000560260 OR5H15A6NDH6 313 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 FRG2CA6NGY1 282 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 CCDC154A6NI56 674 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 HOXB9P17482 250 aaPredicted RBP20.1■□□□□ 0.81
SNX1-210ENST00000560260 HLCSP50747 726 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 ARG2P78540 354 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 PRR5P85299 388 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 TP53BP2Q13625 1128 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 SPDYE7PQ495Y7 208 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 NADK2Q4G0N4 442 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 PAGE3Q5JUK9 113 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 MDS2Q8NDY4 140 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 OR56A1Q8NGH5 318 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 PANX1Q96RD7 426 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 YIPF4Q9BSR8 244 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 TRIM45Q9H8W5 580 aaPredicted RBP20.1■□□□□ 0.81
SNX1-210ENST00000560260 ABI3Q9P2A4 366 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 PCDHGB4Q9UN71 923 aa20.1■□□□□ 0.81
SNX1-210ENST00000560260 NEURL1O76050 574 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 HMGN2P05204 90 aaKnown RBP20.09■□□□□ 0.81
SNX1-210ENST00000560260 DRD5P21918 477 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 TNFSF10P50591 281 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 LASP1Q14847 261 aaKnown RBP20.09■□□□□ 0.81
SNX1-210ENST00000560260 MAPKAPK3Q16644 382 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 MTDHQ86UE4 582 aaKnown RBP20.09■□□□□ 0.81
SNX1-210ENST00000560260 RETREG3Q86VR2 466 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 SLC44A2Q8IWA5 706 aaPredicted RBP20.09■□□□□ 0.81
SNX1-210ENST00000560260 ZADH2Q8N4Q0 377 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 TMEM156Q8N614 296 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 OR4N2Q8NGD1 307 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 SLC22A8Q8TCC7 542 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 TM9SF4Q92544 642 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 ITCHQ96J02 903 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 UTP23Q9BRU9 249 aaKnown RBP20.09■□□□□ 0.81
SNX1-210ENST00000560260 HES7Q9BYE0 225 aa20.09■□□□□ 0.81
SNX1-210ENST00000560260 PAIP1Q9H074 479 aaKnown RBP20.09■□□□□ 0.81
SNX1-210ENST00000560260 DYTNA2CJ06 578 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 RFXANKO14593 260 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 TO15178 435 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 DPM1O60762 260 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 FBXO45P0C2W1 286 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SFTPCP11686 197 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 UQCRC2P22695 453 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 ABCD3P28288 659 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 DCAF7P61962 342 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 RPS26P62854 115 aaKnown RBP20.08■□□□□ 0.81
SNX1-210ENST00000560260 OC90Q02509 493 aaPredicted RBP20.08■□□□□ 0.81
SNX1-210ENST00000560260 OR1C1Q15619 314 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 ZNF791Q3KP31 576 aaPredicted RBP20.08■□□□□ 0.81
SNX1-210ENST00000560260 SAXO2Q658L1 398 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SLC6A19Q695T7 634 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 DESI1Q6ICB0 168 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SPINK14Q6IE38 97 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 IL20RBQ6UXL0 311 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 Q6ZS92 163 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 C6orf120Q7Z4R8 191 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 PTRH1Q86Y79 214 aaKnown RBP20.08■□□□□ 0.81
SNX1-210ENST00000560260 HPS6Q86YV9 775 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SLC16A11Q8NCK7 471 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 ASB15Q8WXK1 588 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 MOAP1Q96BY2 351 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SLC35A5Q9BS91 424 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 MYLK2Q9H1R3 596 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 RMND5AQ9H871 391 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SLAMF8Q9P0V8 285 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 LRFN1Q9P244 771 aa20.08■□□□□ 0.81
SNX1-210ENST00000560260 SMG1Q96Q15 3661 aaKnown RBP20.08■□□□□ 0.81
SNX1-210ENST00000560260 CNTRLQ7Z7A1 2325 aa20.08■□□□□ 0.8
SNX1-210ENST00000560260 A0A1W2PP18 115 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 GXYLT2A0PJZ3 443 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 NKX2-2O95096 273 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 FAM107AO95990 144 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 CYB561P49447 251 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 MAN2A2P49641 1150 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 CASP9P55211 416 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 LRRC74AQ0VAA2 488 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 DUSP5Q16690 384 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 C6orf10Q5SRN2 563 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 TREML1Q86YW5 311 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 MSRB3Q8IXL7 192 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 TAGAPQ8N103 731 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 CYP4Z2PQ8N1L4 340 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 SLC15A4Q8N697 577 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 CDRT4Q8N9R6 151 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 SPACA9Q96E40 222 aaPredicted RBP20.07■□□□□ 0.8
SNX1-210ENST00000560260 OMA1Q96E52 524 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 SLC35G5Q96KT7 338 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 PHF12Q96QT6 1004 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms