RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 LEFTY2O00292 366 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 SOCS6O14544 535 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 CCL16O15467 120 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 NOS1APO75052 506 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 CLTBP09497 229 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 C1GALT1C1LP0DN25 315 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 HOXB6P17509 224 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 CXCL3P19876 107 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 CPN2P22792 545 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 HMGA2P52926 109 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 HSDL2Q6YN16 418 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 Q6ZNB5 142 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 FAM83HQ6ZRV2 1179 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 VN1R2Q8NFZ6 395 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 OR56A3Q8NH54 315 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 SLC5A11Q8WWX8 675 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ZFP3Q96NJ6 502 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 XKR8Q9H6D3 395 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 TMEM38AQ9H6F2 299 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 CCDC86Q9H6F5 360 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 SLA2Q9H6Q3 261 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 BTN3A3O00478 584 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 PIP5K1CO60331 668 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 POP4O95707 220 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 TBX6O95947 436 aaPredicted RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 HRGP04196 525 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 DRD5P21918 477 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 CCR2P41597 374 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 MTNR1AP48039 350 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 CCT3P49368 545 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 EPHB3P54753 998 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 MRPL28Q13084 256 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 SP140Q13342 867 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 RAET1GQ6H3X3 334 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 METTL2BQ6P1Q9 378 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 PRICKLE2Q7Z3G6 844 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 ANKRD53Q8N9V6 530 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 OR13C5Q8NGS8 318 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 ZFAND1Q8TCF1 268 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 APOBEC4Q8WW27 367 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 GLYATL1Q969I3 302 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 ECHDC3Q96DC8 303 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 RIPOR3Q96MK2 946 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SLC46A2Q9BY10 475 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 BRF2Q9HAW0 419 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SPEF1Q9Y4P9 236 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 WNT6Q9Y6F9 365 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SDK1Q7Z5N4 2213 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 H3BSH0 61 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 EPPINO95925 133 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 CD3GP09693 182 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 HSD3B1P14060 373 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 AHRP35869 848 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 POU6F2P78424 691 aaPredicted RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 ABATP80404 500 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 ELAVL2Q12926 359 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 FGFBP1Q14512 234 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 ZNF267Q14586 743 aaPredicted RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 C12orf73Q69YU5 71 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 ANKRD54Q6NXT1 300 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SFTPA1Q8IWL2 248 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 OR11H4Q8NGC9 324 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 BTN2A2Q8WVV5 523 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SPRYD4Q8WW59 207 aaPredicted RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 UFD1Q92890 307 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SECISBP2Q96T21 854 aaKnown RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 MAN2C1Q9NTJ4 1040 aa11.62□□□□□ -0.55
LDLR-205ENST00000557933 SIRT4Q9Y6E7 314 aaPredicted RBP11.62□□□□□ -0.55
LDLR-205ENST00000557933 WASH3PC4AMC7 463 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 I3L521 148 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 TEX28O15482 410 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 PDPK1O15530 556 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 MPZL2O60487 215 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 REM1O75628 298 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ALPPP05187 535 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 CTSAP10619 480 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ITGB7P26010 798 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 CCR6P51684 374 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 LBX1P52954 281 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 CDH11P55287 796 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ZSWIM7Q19AV6 140 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 KLHL12Q53G59 568 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ZNF628Q5EBL2 1059 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ZNF697Q5TEC3 545 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 VRK2Q86Y07 508 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 CCDC116Q8IYX3 515 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 FAM109AQ8N4B1 249 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 SAMD12Q8N8I0 201 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ANKK1Q8NFD2 765 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 PDXPQ96GD0 296 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 RBFOX1Q9NWB1 397 aaKnown RBP11.61□□□□□ -0.55
LDLR-205ENST00000557933 SLC25A13Q9UJS0 675 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ANAPC1Q9H1A4 1944 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 A0A087WUU8 490 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 A0A0A6YYJ9 748 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 GABRPO00591 440 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 PRKAR1AP10644 381 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 TIMP2P16035 220 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 MLLT3P42568 568 aaPredicted RBP11.61□□□□□ -0.55
LDLR-205ENST00000557933 SNRPGP62308 76 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms