RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ANXA8L1Q5VT79 327 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 CGB2Q6NT52 195 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 RTL4Q6ZR62 310 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 ZNF605Q86T29 641 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 SLC44A2Q8IWA5 706 aaPredicted RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 MIER2Q8N344 545 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 SLC15A4Q8N697 577 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 NATD1Q8N6N6 113 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 TMEM178AQ8NBL3 297 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 C17orf47Q8NEP4 570 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 OR10G3Q8NGC4 313 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 OR4A15Q8NGL6 344 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 OR5AK3PQ8NH89 298 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 SNRNP40Q96DI7 357 aaKnown RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 OTUB1Q96FW1 271 aaPredicted RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 RILPQ96NA2 401 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 BTBD9Q96Q07 612 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 TMEM120AQ9BXJ8 343 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 C3orf14Q9HBI5 128 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 SDR39U1Q9NRG7 319 aaPredicted RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 ZCCHC3Q9NUD5 404 aaKnown RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 ZIM2Q9NZV7 527 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 GPR55Q9Y2T6 319 aaPredicted RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 NPFFR2Q9Y5X5 522 aa13.22□□□□□ -0.29
USP3-205ENST00000557884 COPG1Q9Y678 874 aaKnown RBP13.22□□□□□ -0.29
USP3-205ENST00000557884 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 A0A0G2JMM0 328 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 A0A1W2PPB8 328 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 A0A1W2PRS3 328 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 KIR3DP1A8MWS1 328 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 PYCARD-AS1I3L0S3 204 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 RNASET2O00584 256 aaKnown RBP13.21□□□□□ -0.29
USP3-205ENST00000557884 ACOX3O15254 700 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 NME2P1O60361 137 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 PGRP06401 933 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 CCL3P10147 92 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 DRD5P21918 477 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 NME2P22392 152 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 PRR5P85299 388 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 DPY19L1Q2PZI1 675 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 DESI1Q6ICB0 168 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.21□□□□□ -0.29
USP3-205ENST00000557884 CLEC4FQ8N1N0 589 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 GLB1L3Q8NCI6 653 aaPredicted RBP13.21□□□□□ -0.29
USP3-205ENST00000557884 PSD4Q8NDX1 1056 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 OR4N2Q8NGD1 307 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 TMBIM1Q969X1 311 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 OMA1Q96E52 524 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 HSPBAP1Q96EW2 488 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 GIMAP5Q96F15 307 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 C16orf58Q96GQ5 468 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 SGCZQ96LD1 299 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 MS4A4EQ96PG1 132 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 TAAR6Q96RI8 345 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 YIPF4Q9BSR8 244 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 NEUROD4Q9HD90 331 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 ASF1BQ9NVP2 202 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 KLF13Q9Y2Y9 288 aaPredicted RBP13.21□□□□□ -0.29
USP3-205ENST00000557884 OR10H1Q9Y4A9 318 aa13.21□□□□□ -0.29
USP3-205ENST00000557884 CPAMD8Q8IZJ3 1885 aa13.21□□□□□ -0.3
USP3-205ENST00000557884 PRSS51A0A1B0GVH4 220 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 CAPN14A8MX76 684 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 PEX1O43933 1283 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 SCN2BO60939 215 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 RASAL1O95294 804 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 IFI6P09912 130 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 NCF2P19878 526 aaPredicted RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 RFC3P40938 356 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 CCT3P49368 545 aaKnown RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 MEOX1P50221 254 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 PSG6Q00889 435 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 TP53BP2Q13625 1128 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 ZNHIT3Q15649 155 aaPredicted RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 IGFBP7Q16270 282 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 NTRK2Q16620 822 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 TIGD2Q4W5G0 525 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 PRAMEF20Q5VT98 475 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 RPUSD3Q6P087 351 aaKnown RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 FAM180AQ6UWF9 173 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 SULF2Q8IWU5 870 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 SLC34A3Q8N130 599 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 CPSF7Q8N684 471 aaKnown RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 PSMA8Q8TAA3 256 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 GRHL3Q8TE85 626 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 SLC9A6Q92581 669 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 JADE3Q92613 823 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 CHMP6Q96FZ7 201 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 ZNF317Q96PQ6 595 aaPredicted RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 OR52E6Q96RD3 313 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 SIKE1Q9BRV8 207 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 DEPPQ9NTK1 212 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 FAM120CQ9NX05 1096 aaKnown RBP13.2□□□□□ -0.3
USP3-205ENST00000557884 NTMQ9P121 344 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 PCDHGB4Q9UN71 923 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 PCDHGB6Q9Y5F9 930 aa13.2□□□□□ -0.3
USP3-205ENST00000557884 RNF103-CHMP3A0A140T963 221 aa13.19□□□□□ -0.3
USP3-205ENST00000557884 GXYLT2A0PJZ3 443 aa13.19□□□□□ -0.3
USP3-205ENST00000557884 PINLYPA6NC86 204 aa13.19□□□□□ -0.3
USP3-205ENST00000557884 TO15178 435 aa13.19□□□□□ -0.3
USP3-205ENST00000557884 REM1O75628 298 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms