RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	RRM2	P31350	389 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	OR1D4	P47884	311 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	NUBP1	P53384	320 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	RAD23A	P54725	363 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	BTG2	P78543	158 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF155	Q12901	538 aa	Predicted RBP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	TRA2A	Q13595	282 aa	Known RBP eCLIP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	ERV3-1	Q14264	604 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	DUSP5	Q16690	384 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	SLC36A3	Q495N2	470 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	KRT80	Q6KB66	452 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	RHBDD2	Q6NTF9	364 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	UGT2A3	Q6UWM9	527 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	BPHL	Q86WA6	291 aa	Predicted RBP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	COX18	Q8N8Q8	333 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	OR52R1	Q8NGF1	315 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	CYGB	Q8WWM9	190 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	HOXB13	Q92826	284 aa	Predicted RBP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	CDS1	Q92903	461 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	FKBP10	Q96AY3	582 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	AMBRA1	Q9C0C7	1298 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	SLC7A5P2	Q9GIP4	190 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	SLC38A1	Q9H2H9	487 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	MTHFD2L	Q9H903	347 aa	Predicted RBP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	SMURF2	Q9HAU4	748 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	BATF3	Q9NR55	127 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	POLE3	Q9NRF9	147 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	LANCL2	Q9NS86	450 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	PDP1	Q9P0J1	537 aa	Predicted RBP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	SCOC	Q9UIL1	159 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	C3orf18	Q9UK00	162 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	RARRES3	Q9UL19	164 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	CLDN16	Q9Y5I7	305 aa		11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	MAGED1	Q9Y5V3	778 aa	Predicted RBP	11.65	□□□□□ -0.55
SHMT2-233	ENST00000557529	COL6A3	P12111	3177 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	UNC13C	Q8NB66	2214 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	RP1	P56715	2156 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRAMEF25	A6NGN4	478 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	TGFBR3L	H3BV60	316 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	FLRT2	O43155	660 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	GALR2	O43603	387 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	HS6ST1	O60243	411 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRAMEF2	O60811	474 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	SNAP29	O95721	258 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	LDOC1	O95751	146 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	IFNA16	P05015	189 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	GP1BA	P07359	652 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	HBQ1	P09105	142 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	UBTFL6	P0CB48	400 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	CDH2	P19022	906 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	MAOA	P21397	527 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	S1PR1	P21453	382 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	MYF6	P23409	242 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	MAP3K8	P41279	467 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	SMIM11A	P58511	58 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	SPIB	Q01892	262 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	CHRNE	Q04844	493 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	PPP1R8	Q12972	351 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	BLMH	Q13867	455 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNF267	Q14586	743 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	PUM1	Q14671	1186 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	EXOSC7	Q15024	291 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	ZNHIT3	Q15649	155 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	ARHGAP40	Q5TG30	622 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	MLIP	Q5VWP3	458 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	TTC23	Q5W5X9	447 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	DHRS4L2	Q6PKH6	230 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	DBX2	Q6ZNG2	339 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	DGAT2L6	Q6ZPD8	337 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	QSOX2	Q6ZRP7	698 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	WDR53	Q7Z5U6	358 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	HS3ST5	Q8IZT8	346 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	GPR151	Q8TDV0	419 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	NR4A3	Q92570	626 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	CNDP2	Q96KP4	475 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	PTCHD1	Q96NR3	888 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	OR6C1	Q96RD1	312 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	LMF2	Q9BU23	707 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	MKKS	Q9NPJ1	570 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	NECTIN3	Q9NQS3	549 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	PNPLA3	Q9NST1	481 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	UBAP1	Q9NZ09	502 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	SLC13A4	Q9UKG4	626 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	IFT52	Q9Y366	437 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	WDR45	Q9Y484	360 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	TESMIN	Q9Y4I5	508 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	LYVE1	Q9Y5Y7	322 aa		11.64	□□□□□ -0.55
SHMT2-233	ENST00000557529	ADAMTS9	Q9P2N4	1935 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529		D6RAR5	112 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	NTN3	O00634	580 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	DYRK3	O43781	588 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	STX11	O75558	287 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	NKX2-2	O95096	273 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	TNFAIP8	O95379	198 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	LGI1	O95970	557 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	RECK	O95980	971 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	GUSB	P08236	651 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PABPC4L	P0CB38	370 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	TNNI3	P19429	210 aa		11.63	□□□□□ -0.55
SHMT2-233	ENST00000557529	PRKACG	P22612	351 aa		11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms