RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GPR55Q9Y2T6 319 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-227ENST00000557269 KCNE3Q9Y6H6 103 aa11.86□□□□□ -0.51
SHMT2-227ENST00000557269 NUP214P35658 2090 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ERN1O75460 977 aaKnown RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ITGA10O75578 1167 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 DRD5P21918 477 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 PPICP45877 212 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 MAN2A2P49641 1150 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 MVDP53602 400 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 AP2B1P63010 937 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 LASP1Q14847 261 aaKnown RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 MAPRE2Q15555 327 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 DUSP5Q16690 384 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 COX20Q5RI15 118 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 AGAP7PQ5VUJ5 663 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 IRAK1BP1Q5VVH5 260 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 HLA-DQA1Q5Y7H0 255 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 PCSK4Q6UW60 755 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ISLR2Q6UXK2 745 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 PRR22Q8IZ63 422 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 EXD3Q8N9H8 876 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 SLC16A11Q8NCK7 471 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 OR56A1Q8NGH5 318 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 PNPT1Q8TCS8 783 aaKnown RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ZFP90Q8TF47 636 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 RCN3Q96D15 328 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 NEURL3Q96EH8 262 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ABHD17AQ96GS6 310 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ZNF354BQ96LW1 612 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 AGAP4Q96P64 663 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 BTBD9Q96Q07 612 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 RASL10BQ96S79 203 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 SMAD5Q99717 465 aaKnown RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 LMF2Q9BU23 707 aaKnown RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 ANKRD10Q9NXR5 420 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 PKD1L2Q7Z442 2459 aa11.85□□□□□ -0.51
SHMT2-227ENST00000557269 DSPP15924 2871 aaKnown RBP11.85□□□□□ -0.51
SHMT2-227ENST00000557269 GXYLT2A0PJZ3 443 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 FRG2CA6NGY1 282 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 FXYD1O00168 92 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 MRASO14807 208 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 OR6B1O95007 311 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 UNC5CO95185 931 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 KCNH1O95259 989 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 ANP32DO95626 131 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 ALPPP05187 535 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 GABRA3P34903 492 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 CHI3L1P36222 383 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-227ENST00000557269 SOX3P41225 446 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 CPA2P48052 419 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 CD97P48960 835 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 KCNAB2Q13303 367 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 MFAP5Q13361 173 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 NFYCQ13952 458 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 CAPRIN1Q14444 709 aaKnown RBP11.84□□□□□ -0.51
SHMT2-227ENST00000557269 MEP1AQ16819 746 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 ABHD17BQ5VST6 288 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 FAM91A1Q658Y4 838 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 DESI1Q6ICB0 168 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 DHDDSQ86SQ9 333 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 RNF130Q86XS8 419 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 SLC44A2Q8IWA5 706 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-227ENST00000557269 LGI4Q8N135 537 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 C10orf111Q8N326 155 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 OR5D16Q8NGK9 328 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 PIK3R3Q92569 461 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 SLC9A6Q92581 669 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 TP53INP1Q96A56 240 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 MOAP1Q96BY2 351 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 SLC35A4Q96G79 324 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 LCORQ96JN0 433 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-227ENST00000557269 SLC39A3Q9BRY0 314 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 ACTRT3Q9BYD9 372 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 IKZF5Q9H5V7 419 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 TPT1P8Q9HAU6 139 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 CFL2Q9Y281 166 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 YARS2Q9Y2Z4 477 aaKnown RBP11.84□□□□□ -0.51
SHMT2-227ENST00000557269 PCDHGA9Q9Y5G4 932 aaKnown RBP11.84□□□□□ -0.51
SHMT2-227ENST00000557269 CSAG2Q9Y5P2 127 aa11.84□□□□□ -0.51
SHMT2-227ENST00000557269 TNRC6AQ8NDV7 1962 aaKnown RBP11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CPAMD8Q8IZJ3 1885 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 BBIP1A8MTZ0 92 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 MKRN2OSH3BPM6 223 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CLIC1O00299 241 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 AIM2O14862 343 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 TO15178 435 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 NKX2-2O95096 273 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 WDPCPO95876 746 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 IGKV1D-16P01601 117 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 MATN1P21941 496 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 PRDX6P30041 224 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 CD96P40200 585 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 PRIM2P49643 509 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 DCAF7P61962 342 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 RHDQ02161 417 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 STX5Q13190 355 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 TUBA3CQ13748 450 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 SELPLGQ14242 412 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 MMEL1Q495T6 779 aa11.83□□□□□ -0.52
SHMT2-227ENST00000557269 RUNDC3AQ59EK9 446 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms