RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 OR6K3Q8NGY3 331 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ACOT11Q8WXI4 607 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 RAB3CQ96E17 227 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 FUBP3Q96I24 572 aaKnown RBP eCLIP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 NIF3L1Q9GZT8 377 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 MTG2Q9H4K7 406 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ASCL3Q9NQ33 180 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 STOX2Q9P2F5 926 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 UBQLN1Q9UMX0 589 aaKnown RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ABHD14A-ACY1A0A1B0GW23 586 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 OR2M5A3KFT3 312 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 FAM86C2PA6NEL3 165 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ARPC5O15511 151 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SLC7A4O43246 635 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 CRHP06850 196 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 NOS3P29474 1203 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SFNP31947 248 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 VLDLRP98155 873 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 IL10RBQ08334 325 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 OR8G1Q15617 311 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 USF2Q15853 346 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 DUOXA1Q1HG43 343 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 LYPD4Q6UWN0 246 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SPNS3Q6ZMD2 512 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ISCA2Q86U28 154 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SLITRK4Q8IW52 837 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 CCDC117Q8IWD4 279 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-226ENST00000556825 PROKR2Q8NFJ6 384 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF354BQ96LW1 612 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 CASD1Q96PB1 797 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 PKP4Q99569 1192 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 SLC25A37Q9NYZ2 338 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 MGAT4CQ9UBM8 478 aa13.07□□□□□ -0.32
SHMT2-226ENST00000556825 TSTD3H0UI37 97 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 OR1I1O60431 355 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 MPZL2O60487 215 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 CST3P01034 146 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 USP17L7P0C7H9 530 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 OR8G3PP0DMU2 310 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 SLC2A1P11166 492 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 PAX1P15863 534 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 CPEP16870 476 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF14P17017 642 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 NFYBP25208 207 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 PTPN3P26045 913 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 SLC1A2P43004 574 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 C1DQ13901 141 aaKnown RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 SLC14A2Q15849 920 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 SLC36A2Q495M3 483 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 ZRANB3Q5FWF4 1079 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 ARHGAP40Q5TG30 622 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 MEDAGQ5VYS4 303 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 CDPF1Q6NVV7 123 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 Q6ZTK2 550 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 FJX1Q86VR8 437 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 SPNS2Q8IVW8 549 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 C2CD4AQ8NCU7 369 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 WNT2BQ93097 391 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 TMEM203Q969S6 136 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 FAM120BQ96EK7 910 aaKnown RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 NSUN5Q96P11 429 aaKnown RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 CCNL2Q96S94 520 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-226ENST00000556825 ISYNA1Q9NPH2 558 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 HEBP1Q9NRV9 189 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 GLRX2Q9NS18 164 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 GSTK1Q9Y2Q3 226 aa13.06□□□□□ -0.32
SHMT2-226ENST00000556825 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 TMEM72A0PK05 275 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 M0R129 80 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 CASKO14936 926 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SCAMP2O15127 329 aaKnown RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 BCAT2O15382 392 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 EEF1E1O43324 174 aaKnown RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 MBTPS2O43462 519 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PRAF2O60831 178 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 OR2A4O95047 310 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SPDEFO95238 335 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 ELK1P19419 428 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 MAPK3P27361 379 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 BRCA1P38398 1863 aaKnown RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PMELP40967 661 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 CTSOP43234 321 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 OR1G1P47890 313 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SRP9P49458 86 aaKnown RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SULT1E1P49888 294 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 MELKQ14680 651 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 KIAA0040Q15053 153 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PLK5Q496M5 336 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 RNLSQ5VYX0 342 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 ZNF613Q6PF04 617 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SSX6Q7RTT6 188 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 TRIM46Q7Z4K8 759 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 PHACTR4Q8IZ21 702 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 RTL3Q8N8U3 475 aaKnown RBP13.05□□□□□ -0.32
SHMT2-226ENST00000556825 SYT14Q8NB59 555 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 OR56A4Q8NGH8 313 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 GPR150Q8NGU9 434 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 IFI44Q8TCB0 444 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 GNPDA2Q8TDQ7 276 aa13.05□□□□□ -0.32
SHMT2-226ENST00000556825 OR2A7Q96R45 310 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms