RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-205	ENST00000556096	PABPC4L	P0CB38	370 aa	Known RBP	13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	PNLIP	P16233	465 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	EPHA8	P29322	1005 aa	Predicted RBP	13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	AVPR1B	P47901	424 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	NR1H2	P55055	460 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	HSD11B2	P80365	405 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	CFHR1	Q03591	330 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	EXOC3L2	Q2M3D2	409 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	ARHGAP11B	Q3KRB8	267 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	RNF220	Q5VTB9	566 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	TCTN3	Q6NUS6	607 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	WDR74	Q6RFH5	385 aa	Predicted RBP	13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	C16orf62	Q7Z3J2	963 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	GALNT5	Q7Z7M9	940 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC16A11	Q8NCK7	471 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR10G2	Q8NGC3	310 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	DHRS1	Q96LJ7	313 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	PIGU	Q9H490	435 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	PARD6A	Q9NPB6	346 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	ACAD8	Q9UKU7	415 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	PCDHGA8	Q9Y5G5	932 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	HSPE1-MOB4	S4R3N1	261 aa		13.76	□□□□□ -0.21
VPS33B-205	ENST00000556096	RALGAPA1	Q6GYQ0	2036 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096		H3BMH7	237 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SYT5	O00445	386 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	FFAR1	O14842	300 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	BCKDK	O14874	412 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SOX30	O94993	753 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	ATP6V1B1	P15313	513 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	CD1C	P29017	333 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	POLR2I	P36954	125 aa	Known RBP	13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SMIM11A	P58511	58 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	ISL1	P61371	349 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	IGLV3-21	P80748	117 aa	Predicted RBP	13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	MAP4K2	Q12851	820 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	COLEC12	Q5KU26	742 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	RBM48	Q5RL73	367 aa	Known RBP	13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	PRSS42	Q7Z5A4	293 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	KMT5C	Q86Y97	462 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	D2HGDH	Q8N465	521 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	CDRT4	Q8N9R6	151 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SETD9	Q8NE22	299 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	FBLIM1	Q8WUP2	373 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	LOXL4	Q96JB6	756 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	FEV	Q99581	238 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SPRTN	Q9H040	489 aa	Predicted RBP	13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	ING2	Q9H160	280 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	HCN3	Q9P1Z3	774 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	KLHL3	Q9UH77	587 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC9A8	Q9Y2E8	581 aa		13.75	□□□□□ -0.21
VPS33B-205	ENST00000556096	SMIM31	A0A1B0GVY4	71 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CLDN4	O14493	209 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CCNB2	O95067	398 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	ALPP	P05187	535 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	MSL3P1	P0C860	447 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	ACP2	P11117	423 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	MAP3K8	P41279	467 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	TPD52	P55327	224 aa	Predicted RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CHRNE	Q04844	493 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	NPRL3	Q12980	569 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC5A8	Q8N695	610 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CHDH	Q8NE62	594 aa	Predicted RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR4D11	Q8NGI4	311 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR52J3	Q8NH60	311 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	ADAMTS16	Q8TE57	1224 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	PHF10	Q8WUB8	498 aa	Known RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC9A6	Q92581	669 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	HDAC2	Q92769	488 aa	Known RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CDS1	Q92903	461 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	PEX11G	Q96HA9	241 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC41A2	Q96JW4	573 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	STAC	Q99469	402 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	GTPBP2	Q9BX10	602 aa	Known RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	GABARAPL3	Q9BY60	117 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	RIBC2	Q9H4K1	309 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	TRIM45	Q9H8W5	580 aa	Predicted RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	MTHFD2L	Q9H903	347 aa	Predicted RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CAPN10	Q9HC96	672 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	DUSP22	Q9NRW4	184 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	RXFP3	Q9NSD7	469 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	IRAK4	Q9NWZ3	460 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	NDRG4	Q9ULP0	352 aa	Known RBP	13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	SATB2	Q9UPW6	733 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	POFUT2	Q9Y2G5	429 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	CABIN1	Q9Y6J0	2220 aa		13.74	□□□□□ -0.21
VPS33B-205	ENST00000556096	EME2	A4GXA9	379 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PCDH17	O14917	1159 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	YKT6	O15498	198 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PCDHGA12	O60330	932 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SEMA7A	O75326	666 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	EPPIN	O95925	133 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ALOX5	P09917	674 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CT62	P0C5K7	136 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	HOXD11	P31277	338 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ARL4D	P49703	201 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CLK3	P49761	638 aa	Known RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	HPCA	P84074	193 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	IL1RL1	Q01638	556 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CD47	Q08722	323 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	BIK	Q13323	160 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms