RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SPRR3Q9UBC9 169 aa9.74□□□□□ -0.85
SHMT2-215ENST00000554656 TAGLN3Q9UI15 199 aa9.74□□□□□ -0.85
SHMT2-215ENST00000554656 SNX6Q9UNH7 406 aa9.74□□□□□ -0.85
SHMT2-215ENST00000554656 RRP15Q9Y3B9 282 aaKnown RBP9.74□□□□□ -0.85
SHMT2-215ENST00000554656 FIS1Q9Y3D6 152 aa9.74□□□□□ -0.85
SHMT2-215ENST00000554656 MED12Q93074 2177 aa9.74□□□□□ -0.85
SHMT2-215ENST00000554656 MAP1AP78559 2803 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 A0A0G2JNJ9 132 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 ATP6AP2A0A1C7CYW4 349 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 OR14I1A6ND48 311 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 WASHC1A8K0Z3 465 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 SLC28A1O00337 649 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 PLPP1O14494 284 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 AQP7O14520 342 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 ATP6AP2O75787 350 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 LRATO95237 230 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 CLPSP04118 112 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 RFPL3SP0C7P2 107 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 HSD3B1P14060 373 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TNNI3P19429 210 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 CPN2P22792 545 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 PRPH2P23942 346 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 HSD3B2P26439 372 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 STT3AP46977 705 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TNFRSF17Q02223 184 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 FOLH1Q04609 750 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 KLF10Q13118 480 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 MAD2L1Q13257 205 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 DDX39BQ13838 428 aaKnown RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 MAPRE2Q15555 327 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 GSTA3Q16772 222 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 MPEG1Q2M385 716 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 SPRED3Q2MJR0 410 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TMEM35AQ53FP2 167 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 PAGE2BQ5JRK9 111 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 DEPDC1Q5TB30 811 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 KHDRBS2Q5VWX1 349 aaKnown RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 MED27Q6P2C8 311 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 ZNF585AQ6P3V2 769 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 OPN5Q6U736 354 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TRIM46Q7Z4K8 759 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TREML1Q86YW5 311 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 DDIASQ8IXT1 998 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 SRFBP1Q8NEF9 429 aaKnown RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 NUBPLQ8TB37 319 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 UCN3Q969E3 161 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 SENP5Q96HI0 755 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 METTL2AQ96IZ6 378 aaKnown RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 SGCZQ96LD1 299 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 PPP3R2Q96LZ3 170 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 KCNA7Q96RP8 456 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 ROGDIQ9GZN7 287 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 C1orf21Q9H246 121 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TUBB1Q9H4B7 451 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 ZNF703Q9H7S9 590 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-215ENST00000554656 AKTIPQ9H8T0 292 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 DMRT3Q9NQL9 472 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 SACM1LQ9NTJ5 587 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 ARL8BQ9NVJ2 186 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 Q9UFV3 132 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 TSC22D4Q9Y3Q8 395 aa9.73□□□□□ -0.85
SHMT2-215ENST00000554656 A0A1B0GTL3 188 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 A0A1W2PS29 197 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 KDM4EB2RXH2 506 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 H0YIV9 168 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 MANBAO00462 879 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 BCKDKO14874 412 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 RGS14O43566 566 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 TMPRSS11DO60235 418 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 SUSD5O60279 629 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 ULK1O75385 1050 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 EEDO75530 441 aaKnown RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 P04436 131 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 IDO1P14902 403 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 ARL1P40616 181 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 STX1BP61266 288 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 ERVK-8P63133 956 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 CSTF3Q12996 717 aaKnown RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 SLAMF1Q13291 335 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 HIST2H2ACQ16777 129 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 AP5B1Q2VPB7 878 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 PRAMEF20Q5VT98 475 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 HIST2H2AA3Q6FI13 130 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 OR4C11Q6IEV9 310 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 MRM1Q6IN84 353 aaKnown RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 GRHL2Q6ISB3 625 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 PAOXQ6QHF9 649 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 B3GNT6Q6ZMB0 384 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 SEM1Q6ZVN7 128 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 FAM9CQ8IZT9 166 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 OR5L2Q8NGL0 311 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 HUS1BQ8NHY5 278 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 RP9Q8TA86 221 aaKnown RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 PAQR8Q8TEZ7 354 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 TSPEARQ8WU66 669 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 KLHL29Q96CT2 875 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 TUBGCP3Q96CW5 907 aa9.72□□□□□ -0.85
SHMT2-215ENST00000554656 SLC7A6OSQ96CW6 309 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 SPACA9Q96E40 222 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-215ENST00000554656 CMTM7Q96FZ5 175 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms