RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LMF2Q9BU23 707 aaKnown RBP11.33□□□□□ -0.6
SHMT2-209ENST00000553949 ACTRT3Q9BYD9 372 aa11.33□□□□□ -0.6
SHMT2-209ENST00000553949 SLC25A37Q9NYZ2 338 aa11.33□□□□□ -0.6
SHMT2-209ENST00000553949 STMN3Q9NZ72 180 aa11.33□□□□□ -0.6
SHMT2-209ENST00000553949 VAPAQ9P0L0 249 aa11.33□□□□□ -0.6
SHMT2-209ENST00000553949 PCDHB14Q9Y5E9 798 aa11.33□□□□□ -0.6
SHMT2-209ENST00000553949 PCDHGA9Q9Y5G4 932 aaKnown RBP11.33□□□□□ -0.6
SHMT2-209ENST00000553949 TRBV5-3A0A0A0MS03 114 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 FRG2CA6NGY1 282 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 TTC36A6NLP5 189 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 ITGA10O75578 1167 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 KRT75O95678 551 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 ALPPP05187 535 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 MATN1P21941 496 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 MAP3K8P41279 467 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 RPS26P62854 115 aaKnown RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 PSG6Q00889 435 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 MFAP5Q13361 173 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 KRT72Q14CN4 511 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 ZNHIT3Q15649 155 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 NNATQ16517 81 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 LINC00303Q3SY05 128 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 PIGGQ5H8A4 983 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 EXOSC6Q5RKV6 272 aaKnown RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 ABHD17BQ5VST6 288 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 CDC73Q6P1J9 531 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 ANGPTL8Q6UXH0 198 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 NPSR1Q6W5P4 371 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 RNF130Q86XS8 419 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 SLC44A2Q8IWA5 706 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 MSRB3Q8IXL7 192 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 TAGAPQ8N103 731 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 BEST3Q8N1M1 668 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 PCYOX1LQ8NBM8 494 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 SLC16A11Q8NCK7 471 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 FBXO30Q8TB52 745 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 SLC9A6Q92581 669 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 JADE3Q92613 823 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 AURKBQ96GD4 344 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 SLC35G5Q96KT7 338 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 LMF1Q96S06 567 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 RASL10BQ96S79 203 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 SMAD5Q99717 465 aaKnown RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 YIPF4Q9BSR8 244 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 NXF5Q9H1B4 397 aaKnown RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 SERHL2Q9H4I8 314 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 TPT1P8Q9HAU6 139 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 IL1RL2Q9HB29 575 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 ARL8BQ9NVJ2 186 aa11.32□□□□□ -0.6
SHMT2-209ENST00000553949 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 FAF1Q9UNN5 650 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 YARS2Q9Y2Z4 477 aaKnown RBP11.32□□□□□ -0.6
SHMT2-209ENST00000553949 CROCCQ5TZA2 2017 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 MGAQ8IWI9 3026 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 MKRN2OSH3BPM6 223 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 CLIC1O00299 241 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 AIM2O14862 343 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 TO15178 435 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ACOX3O15254 700 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ZNF354AO60765 605 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 NKX2-2O95096 273 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 NADKO95544 446 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 NPPAP01160 153 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 KRT16P08779 473 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ALOX5P09917 674 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 FAM87AP0C7U9 286 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ACP2P11117 423 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 GABRA3P34903 492 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 MAN2A2P49641 1150 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 SSR4P51571 173 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 CASP9P55211 416 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 NRG3P56975 720 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 PSPHP78330 225 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 RHDQ02161 417 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 DUSP5Q16690 384 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 TRMT5Q32P41 509 aaKnown RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 TRPM8Q7Z2W7 1104 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 SLC15A4Q8N697 577 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 OR4N2Q8NGD1 307 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 SLC22A8Q8TCC7 542 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 PNPT1Q8TCS8 783 aaKnown RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 MIPOL1Q8TD10 442 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 GPR151Q8TDV0 419 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 TTC9Q92623 222 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 LRRC58Q96CX6 371 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 HSPBAP1Q96EW2 488 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 OTUB1Q96FW1 271 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 STACQ99469 402 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 CGREF1Q99674 301 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ARHGAP9Q9BRR9 750 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 EFCAB1Q9HAE3 211 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ZBTB20Q9HC78 741 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 GIN1Q9NXP7 522 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 ABI3Q9P2A4 366 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 TAGLN3Q9UI15 199 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 OR10H1Q9Y4A9 318 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 GMEB1Q9Y692 573 aa11.31□□□□□ -0.6
SHMT2-209ENST00000553949 MAP1BP46821 2468 aaKnown RBP11.31□□□□□ -0.6
SHMT2-209ENST00000553949 GXYLT2A0PJZ3 443 aa11.3□□□□□ -0.6
SHMT2-209ENST00000553949 DUXAA6NLW8 204 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms