RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CD8BP10966 210 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 GRPRP30550 384 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 SOX2P48431 317 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 DNASE1L1P49184 302 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 DAPP51397 102 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 CCINQ13939 588 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 ZNF77Q15935 545 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 SLC29A4Q7RTT9 530 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 B3GNT8Q7Z7M8 397 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 OMA1Q96E52 524 aa15.4■□□□□ 0.06
CUX1-213ENST00000549414 RDH16O75452 317 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 SLC6A6P31641 620 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 PLBD1Q6P4A8 553 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 B3GNT7Q8NFL0 401 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 OR5K2Q8NHB8 316 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 EFHD2Q96C19 240 aaPredicted RBP15.39■□□□□ 0.05
CUX1-213ENST00000549414 PDCD10Q9BUL8 212 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 COMMD4Q9H0A8 199 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ZBTB20Q9HC78 741 aaPredicted RBP15.39■□□□□ 0.05
CUX1-213ENST00000549414 SLC25A37Q9NYZ2 338 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 CSNK1G3Q9Y6M4 447 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 FAM25EA8MYX2 175 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 SOX3P41225 446 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 CD83Q01151 205 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ELOCQ15369 112 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 KLHL24Q6TFL4 600 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 MMP21Q8N119 569 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 TMEM151AQ8N4L1 468 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 TMEM156Q8N614 296 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 YIPF7Q8N8F6 280 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 DENND6BQ8NEG7 585 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 C1orf216Q8TAB5 229 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 TREX2Q9BQ50 279 aaPredicted RBP15.39■□□□□ 0.05
CUX1-213ENST00000549414 TTYH2Q9BSA4 534 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ACTRT3Q9BYD9 372 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 MAN2B1O00754 1011 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 CLEC3AO75596 197 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 NDUFV2P19404 249 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 EIF1AXP47813 144 aaKnown RBP15.39■□□□□ 0.05
CUX1-213ENST00000549414 MTNR1AP48039 350 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ARFIP1P53367 373 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ARHGAP19Q14CB8 494 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ZNF691Q5VV52 312 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 CYHR1Q6ZMK1 362 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 BEX2Q9BXY8 128 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 CXorf36Q9H7Y0 433 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 BEX1Q9HBH7 125 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ACTR10Q9NZ32 417 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 A0A1W2PRG6 482 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 SCO2O43819 266 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 DNAJB5O75953 348 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 JMJD7P0C870 316 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 PCSK6P29122 969 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 GGT2P36268 569 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 METAP1P53582 386 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 C1orf189Q5VU69 101 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ALG1LQ6GMV1 187 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 FRMPD2BQ6IN97 320 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 TUBA3EQ6PEY2 450 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 PHOSPHO2Q8TCD6 241 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ZFP90Q8TF47 636 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 C16orf58Q96GQ5 468 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 SAMD8Q96LT4 415 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 EPYCQ99645 322 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 SLC22A4Q9H015 551 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.39■□□□□ 0.05
CUX1-213ENST00000549414 PCDHGB7Q9Y5F8 929 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 FER1L6Q2WGJ9 1857 aa15.39■□□□□ 0.05
CUX1-213ENST00000549414 ATAD5Q96QE3 1844 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 A0A0A6YYC8 382 aaPredicted RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 I3L1I5 382 aaPredicted RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 SGK494L7N484 410 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 LILRB3O75022 631 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 ENTPD6O75354 484 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 HK1P19367 917 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 GAB1Q13480 694 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 Q6ZNB5 142 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 HSPA12BQ96MM6 686 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 CITED4Q96RK1 184 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 DPH1Q9BZG8 443 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 TMEM168Q9H0V1 697 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 ZNF225Q9UK10 706 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 A0A0G2JPF8 293 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 PRSS38A1L453 326 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 UNC119BA6NIH7 251 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 HNRNPCL3B7ZW38 293 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 ORC5O43913 435 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 FURINP09958 794 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 HNRNPCL4P0DMR1 293 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 ZNF24P17028 368 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 NUP62P37198 522 aaPredicted RBP15.38■□□□□ 0.05
CUX1-213ENST00000549414 NRG3P56975 720 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 DCDC1P59894 354 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 KEAP1Q14145 624 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 ZNF750Q32MQ0 723 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 TMEM240Q5SV17 173 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 SLC38A5Q8WUX1 472 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 VN1R3Q9BXE9 311 aa15.38■□□□□ 0.05
CUX1-213ENST00000549414 PDE7BQ9NP56 450 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms