RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 BEX4Q9NWD9 120 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-218ENST00000548945 MAT2BQ9NZL9 334 aa11.7□□□□□ -0.54
PTCH1-218ENST00000548945 PRODH2Q9UF12 536 aa11.7□□□□□ -0.54
PTCH1-218ENST00000548945 PCTPQ9UKL6 214 aa11.7□□□□□ -0.54
PTCH1-218ENST00000548945 FN1P02751 2386 aaKnown RBP11.7□□□□□ -0.54
PTCH1-218ENST00000548945 PRAMEF25A6NGN4 478 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 OR6C70A6NIJ9 312 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 ABCB7O75027 752 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 CBX7O95931 251 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 SLCO1A2P46721 670 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 AGFG1P52594 562 aaKnown RBP11.69□□□□□ -0.54
PTCH1-218ENST00000548945 GFRA1P56159 465 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 TRA2BP62995 288 aaKnown RBP11.69□□□□□ -0.54
PTCH1-218ENST00000548945 PLCXD2Q0VAA5 305 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 GAB1Q13480 694 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 MMP21Q8N119 569 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 GBP7Q8N8V2 638 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-218ENST00000548945 WDSUB1Q8N9V3 476 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 NOA1Q8NC60 698 aaKnown RBP11.69□□□□□ -0.54
PTCH1-218ENST00000548945 OR14L1PQ8NHC6 308 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 ERP27Q96DN0 273 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 C18orf12Q96KH6 178 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 NODALQ96S42 347 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 ITPAQ9BY32 194 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 BRINP2Q9C0B6 783 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 ELOVL6Q9H5J4 265 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 ZBTB26Q9HCK0 441 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 GALNT9Q9HCQ5 603 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 SERHLQ9NQF3 203 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 NMRK1Q9NWW6 199 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 KLRF1Q9NZS2 232 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 BCAP29Q9UHQ4 241 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 MRPS18CQ9Y3D5 142 aaKnown RBP11.69□□□□□ -0.54
PTCH1-218ENST00000548945 CSPG4Q6UVK1 2322 aa11.69□□□□□ -0.54
PTCH1-218ENST00000548945 SH3D21A4FU49 640 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 FRG2CA6NGY1 282 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 H0Y3Z8 333 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 SMIM24O75264 130 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 UGT2B11O75310 529 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 ERAL1O75616 437 aaKnown RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 BCAS2O75934 225 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 COL6A2P12110 1019 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 CD53P19397 219 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 SRD5A2P31213 254 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 PHBP35232 272 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 SOX18P35713 384 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 FEN1P39748 380 aaKnown RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 MAGEA12P43365 314 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 CPA2P48052 419 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 EMDP50402 254 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 DIO3P55073 304 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 GALNT1Q10472 559 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 FOXF2Q12947 444 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 EXOSC7Q15024 291 aaKnown RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 TRADDQ15628 312 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 NNATQ16517 81 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 ERCC6LQ2NKX8 1250 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 TSNAXIP1Q2TAA8 658 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 GLE1Q53GS7 698 aaKnown RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 SHEQ5VZ18 495 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 C8orf74Q6P047 294 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 AAGABQ6PD74 315 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 FAM111BQ6SJ93 734 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 MILR1Q7Z6M3 343 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 IFNEQ86WN2 208 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 PLCZ1Q86YW0 608 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 TRIM42Q8IWZ5 723 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 WFDC11Q8NEX6 87 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 ZNF675Q8TD23 568 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 TMCO6Q96DC7 493 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 PHF21BQ96EK2 531 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 COL21A1Q96P44 957 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 G6PC3Q9BUM1 346 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 FAIM2Q9BWQ8 316 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 VPS11Q9H270 941 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 ACSS3Q9H6R3 686 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 GALNT8Q9NY28 637 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 CLCF1Q9UBD9 225 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 NDRG3Q9UGV2 375 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 SLC12A4Q9UP95 1085 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 MAPRE3Q9UPY8 281 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 GPR55Q9Y2T6 319 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 PLLPQ9Y342 182 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 V9GYY5 206 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-218ENST00000548945 DSCAMO60469 2012 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 HIVEP2P31629 2446 aa11.68□□□□□ -0.54
PTCH1-218ENST00000548945 A8MXE2 369 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 OTCP00480 354 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 CRHP06850 196 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 RPS17P08708 135 aaKnown RBP11.67□□□□□ -0.54
PTCH1-218ENST00000548945 CNTFP26441 200 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 LHX2P50458 406 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 HMGCS1Q01581 520 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 UAP1Q16222 522 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-218ENST00000548945 BCL2A1Q16548 175 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 TRMT12Q53H54 448 aaKnown RBP11.67□□□□□ -0.54
PTCH1-218ENST00000548945 DESI1Q6ICB0 168 aa11.67□□□□□ -0.54
PTCH1-218ENST00000548945 SAMD14Q8IZD0 417 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-218ENST00000548945 PLD6Q8N2A8 252 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms