RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CHERPQ8IWX8 916 aaKnown RBP10.85□□□□□ -0.67
HDAC4-216ENST00000544989 OR5M3Q8NGP4 307 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 OR9A2Q8NGT5 310 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ZFP28Q8NHY6 868 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ITLN2Q8WWU7 325 aaPredicted RBP10.85□□□□□ -0.67
HDAC4-216ENST00000544989 MTERF3Q96E29 417 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 PGM2Q96G03 612 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 TMEM41AQ96HV5 264 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 FCRL1Q96LA6 429 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 MECRQ9BV79 373 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ITPAQ9BY32 194 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ANGPTL4Q9BY76 406 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 NXF5Q9H1B4 397 aaKnown RBP10.85□□□□□ -0.67
HDAC4-216ENST00000544989 DEFB127Q9H1M4 99 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ZNF703Q9H7S9 590 aaPredicted RBP10.85□□□□□ -0.67
HDAC4-216ENST00000544989 METTL7AQ9H8H3 244 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 TNFRSF12AQ9NP84 129 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ACKR4Q9NPB9 350 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 COQ3Q9NZJ6 369 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 MRTO4Q9UKD2 239 aaKnown RBP10.85□□□□□ -0.67
HDAC4-216ENST00000544989 GPR55Q9Y2T6 319 aaPredicted RBP10.85□□□□□ -0.67
HDAC4-216ENST00000544989 FIS1Q9Y3D6 152 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 PCDHGB3Q9Y5G1 929 aa10.85□□□□□ -0.67
HDAC4-216ENST00000544989 ADGRG4Q8IZF6 3080 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 DNAJC13O75165 2243 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 TRGV5A0A0B4J1U4 118 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ATP6AP2A0A1C7CYW4 349 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 OR6C70A6NIJ9 312 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 LSM1O15116 133 aaKnown RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 TRIM3O75382 744 aaPredicted RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ERN1O75460 977 aaKnown RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ATP6AP2O75787 350 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 WISP2O76076 250 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 SERPINE1P05121 402 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 CHRNGP07510 517 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 LINC00032P0C843 101 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 GRK2P25098 689 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 GCKP35557 465 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 CASP3P42574 277 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 SERPINB4P48594 390 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 RPL38P63173 70 aaKnown RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 MRPS35P82673 323 aaKnown RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 HSF1Q00613 529 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 DUSP2Q05923 314 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 MAD2L1Q13257 205 aaPredicted RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 SF3B4Q15427 424 aaKnown RBP eCLIP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 LTB4RQ15722 352 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 UGT3A2Q3SY77 523 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ATP6AP1LQ52LC2 224 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ACAD11Q709F0 780 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 LIX1Q8N485 282 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 NATD1Q8N6N6 113 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 KAT2AQ92830 837 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 PPCDCQ96CD2 204 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 OMA1Q96E52 524 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ZBED6CLQ96FA7 236 aaPredicted RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 JSRP1Q96MG2 331 aaPredicted RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 RILPQ96NA2 401 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 COL21A1Q96P44 957 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 PHF12Q96QT6 1004 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 CENPHQ9H3R5 247 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 REEP4Q9H6H4 257 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 EXO5Q9H790 373 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 HHATLQ9HCP6 504 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 DDX18Q9NVP1 670 aaKnown RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 ACAD8Q9UKU7 415 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 C19orf53Q9UNZ5 99 aaPredicted RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 MAPRE3Q9UPY8 281 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 DTX4Q9Y2E6 619 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.84□□□□□ -0.67
HDAC4-216ENST00000544989 AKAP9Q99996 3911 aa10.84□□□□□ -0.67
HDAC4-216ENST00000544989 PCNX1Q96RV3 2341 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 ZNF407Q9C0G0 2248 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 PIP5K1BO14986 540 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 PDPK1O15530 556 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 WDR1O75083 606 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 LYPLA1O75608 230 aaPredicted RBP10.83□□□□□ -0.68
HDAC4-216ENST00000544989 PDE9AO76083 593 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 HSPA4LO95757 839 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 JUNP05412 331 aaKnown RBP10.83□□□□□ -0.68
HDAC4-216ENST00000544989 PRPS2P11908 318 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 GABRA1P14867 456 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 GDF1P27539 372 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 IL12BP29460 328 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 PTGER4P35408 488 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 HPCAL1P37235 193 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 PSMD4P55036 377 aaKnown RBP10.83□□□□□ -0.68
HDAC4-216ENST00000544989 DUSP8Q13202 625 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 SMU1Q2TAY7 513 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 GALNTL6Q49A17 601 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 VPS26BQ4G0F5 336 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 CYP27C1Q4G0S4 372 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 TNFAIP8L3Q5GJ75 292 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 WLSQ5T9L3 541 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 FAM219BQ5XKK7 198 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 FAM180BQ6P0A1 224 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 ZCCHC23Q6ZST2 131 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 FGD2Q7Z6J4 655 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 EXOC3L1Q86VI1 746 aa10.83□□□□□ -0.68
HDAC4-216ENST00000544989 OR2L13Q8N349 312 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms