RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GMDSO60547 372 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 HMGN1P05114 100 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 SCGB2B2Q4G0G5 96 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 ZBTB37Q5TC79 503 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 C8orf82Q6P1X6 216 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 SCAMP4Q969E2 229 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 RELTQ969Z4 430 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 CPNE2Q96FN4 548 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 HRH3Q9Y5N1 445 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 DOCK5Q9H7D0 1870 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 SLC31A1O15431 190 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 RAF1P04049 648 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 C8orf89P0DMQ9 161 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 GPR4P46093 362 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF140P52738 457 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 BRAT1Q6PJG6 821 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 RNASE11Q8TAA1 199 aaKnown RBP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 SPRYD4Q8WW59 207 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 OTUB2Q96DC9 234 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 PLEKHA6Q9Y2H5 1048 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 PCDHGB7Q9Y5F8 929 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 PRSS21Q9Y6M0 314 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 LOXHD1Q8IVV2 1947 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 FAM183AA6NL82 134 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 E7EQ34 232 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 SCAMP1O15126 338 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 FRS3O43559 492 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 OR1F1O43749 312 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 B4GALT3O60512 393 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 PCGF2P35227 344 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 NCBP2P52298 156 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIMS1-215ENST00000544547 OR52N2Q8NGI0 321 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 NUBP2Q9Y5Y2 271 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 SBF2Q86WG5 1849 aa13.5□□□□□ -0.25
LIMS1-215ENST00000544547 ANXA2P2A6NMY6 339 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 F5H0A9 414 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ANXA2P07355 339 aaKnown RBP13.49□□□□□ -0.25
LIMS1-215ENST00000544547 EDNRAP25101 427 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF33BQ06732 778 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SLC14A1Q13336 389 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 CDONQ4KMG0 1287 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 PRAMEF17Q5VTA0 474 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 FAM171BQ6P995 826 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 PAQR7Q86WK9 346 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 CLDN22Q8N7P3 220 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF615Q8N8J6 731 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 KREMEN2Q8NCW0 462 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ACTR6Q9GZN1 396 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 RDH14Q9HBH5 336 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF226Q9NYT6 803 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 C5orf51A6NDU8 294 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SGCEO43556 437 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 KDELR3O43731 214 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 PRKYO43930 277 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 IFNGP01579 166 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 PTGER1P34995 402 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SOX2P48431 317 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 HBA1P69905 142 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 MC2RQ01718 297 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 GBX1Q14549 363 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 NDUFA9Q16795 377 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 GPRC6AQ5T6X5 926 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 PYHIN1Q6K0P9 492 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ACBD7Q8N6N7 88 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF454Q8N9F8 522 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 NLGN4YQ8NFZ3 816 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SLC25A46Q96AG3 418 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 OPALINQ96PE5 141 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 C1QTNF6Q9BXI9 259 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 TRPV4Q9HBA0 871 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 PPT2Q9UMR5 302 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ARL6IP5O75915 188 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 MT-ND5P03915 603 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 MGAT3Q09327 533 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 GPR176Q14439 515 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 TCTE1Q5JU00 501 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 COX20Q5RI15 118 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ADGRF1Q5T601 910 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SBSNQ6UWP8 590 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SLC51BQ86UW2 128 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 DDOQ99489 341 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 MGME1Q9BQP7 344 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 GPR62Q9BZJ7 368 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SDHAF2Q9NX18 166 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ELOVL2Q9NXB9 296 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 NOP16Q9Y3C1 178 aaKnown RBP13.49□□□□□ -0.25
LIMS1-215ENST00000544547 KIF13BQ9NQT8 1826 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF432O94892 652 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 FGF19O95750 216 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 TCRBP04435 133 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 SLC5A12Q1EHB4 618 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ZNF527Q8NB42 609 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 POGLUT1Q8NBL1 392 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 INO80EQ8NBZ0 244 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-215ENST00000544547 TMEM185AQ8NFB2 350 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 FAM46AQ96IP4 442 aaKnown RBP13.49□□□□□ -0.25
LIMS1-215ENST00000544547 C7orf34Q96L11 122 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ACTL8Q9H568 366 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 ACTR10Q9NZ32 417 aa13.49□□□□□ -0.25
LIMS1-215ENST00000544547 GABRPO00591 440 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms