RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	LRRC58	Q96CX6	371 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	NEURL3	Q96EH8	262 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	OTUB1	Q96FW1	271 aa	Predicted RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	AURKB	Q96GD4	344 aa	Predicted RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	LCOR	Q96JN0	433 aa	Predicted RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	VSTM2L	Q96N03	204 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	PHF12	Q96QT6	1004 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	CGREF1	Q99674	301 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	TRIM4	Q9C037	500 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	NXF5	Q9H1B4	397 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	RAD21L1	Q9H4I0	556 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545		Q9N2J8	555 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLC6A13	Q9NSD5	602 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	NTM	Q9P121	344 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	MAP10	Q9P2G4	905 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	MYOT	Q9UBF9	498 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	DTX4	Q9Y2E6	619 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	YARS2	Q9Y2Z4	477 aa	Known RBP	9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	PCDHGB3	Q9Y5G1	929 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	FREM2	Q5SZK8	3169 aa		9.41	□□□□□ -0.9
CPSF7-221	ENST00000543545	WDFY3	Q8IZQ1	3526 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	FRG2C	A6NGY1	282 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	TTC36	A6NLP5	189 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	DUXA	A6NLW8	204 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ITGA10	O75578	1167 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	REM1	O75628	298 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	OR2J2	O76002	312 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	CBX6	O95503	412 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ITGB2	P05107	769 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	OR12D1	P0DN82	309 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	PPIB	P23284	216 aa	Known RBP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	CASR	P41180	1078 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	KHK	P50053	298 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	SSR4	P51571	173 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	POLE2	P56282	527 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	CORO7	P57737	925 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	OC90	Q02509	493 aa	Predicted RBP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	COL28A1	Q2UY09	1125 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	PIGG	Q5H8A4	983 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	LRIF1	Q5T3J3	769 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ATAD3B	Q5T9A4	648 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	CDC73	Q6P1J9	531 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	DLEU7	Q6UYE1	221 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	PRR22	Q8IZ63	422 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	COX18	Q8N8Q8	333 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLC16A11	Q8NCK7	471 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	SNRNP27	Q8WVK2	155 aa	Known RBP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	XAGE5	Q8WWM1	108 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ASB15	Q8WXK1	588 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	PSMF1	Q92530	271 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ADIPOR1	Q96A54	375 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	TP53INP1	Q96A56	240 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ROPN1L	Q96C74	230 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	HSPBAP1	Q96EW2	488 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	GIMAP5	Q96F15	307 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	SH3GL1	Q99961	368 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	LMF2	Q9BU23	707 aa	Known RBP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	OR51I1	Q9H343	314 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	PRORY	Q9H606	182 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	EPS8L2	Q9H6S3	715 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	ZNF552	Q9H707	407 aa	Predicted RBP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	EXD2	Q9NVH0	621 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	GPATCH2	Q9NW75	528 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	SLC25A37	Q9NYZ2	338 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	VAPA	Q9P0L0	249 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	GPR55	Q9Y2T6	319 aa	Predicted RBP	9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	CHD8	Q9HCK8	2581 aa		9.4	□□□□□ -0.9
CPSF7-221	ENST00000543545	GXYLT2	A0PJZ3	443 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	TMEM247	A6NEH6	219 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	TMEM200C	A6NKL6	621 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545		A8MVJ9	347 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545		B2RBV5	119 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ACOX3	O15254	700 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	MAN1A2	O60476	641 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	UBOX5	O94941	541 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	SOX30	O94993	753 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	UNC5C	O95185	931 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PSMG1	O95456	288 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	AGR2	O95994	175 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	F10	P00742	488 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	NPPA	P01160	153 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	C1QC	P02747	245 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ACP2	P11117	423 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PTPN6	P29350	595 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	TRHR	P34981	398 aa	Predicted RBP	9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	MTPN	P58546	118 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	ARG2	P78540	354 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PSG6	Q00889	435 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	PLCXD2	Q0VAA5	305 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	MFAP5	Q13361	173 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	DUSP5	Q16690	384 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	DECR1	Q16698	335 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	RUNDC3A	Q59EK9	446 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	COX20	Q5RI15	118 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	H3F3C	Q6NXT2	135 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	OPN5	Q6U736	354 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	IL20RB	Q6UXL0	311 aa		9.39	□□□□□ -0.91
CPSF7-221	ENST00000543545	NPSR1	Q6W5P4	371 aa		9.39	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms