RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CAMKVQ8NCB2 501 aa15.31■□□□□ 0.04
COL4A1-204ENST00000543140 CDS1Q92903 461 aa15.31■□□□□ 0.04
COL4A1-204ENST00000543140 BTBD2Q9BX70 525 aa15.31■□□□□ 0.04
COL4A1-204ENST00000543140 POLMQ9NP87 494 aaPredicted RBP15.31■□□□□ 0.04
COL4A1-204ENST00000543140 CORINQ9Y5Q5 1042 aa15.31■□□□□ 0.04
COL4A1-204ENST00000543140 SPTY2D1-AS1A0A0U1RR47 76 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 URADA6NGE7 173 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 HCRTR1O43613 425 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 ENTPD6O75354 484 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 ALPPP05187 535 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 HSMCR30P0CW71 290 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 ALOX12P18054 663 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 MMP11P24347 488 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 TLX1P31314 330 aaPredicted RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 AVPR1BP47901 424 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 TBCEQ15813 527 aaPredicted RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 ABHD13Q7L211 337 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 BCDIN3DQ7Z5W3 292 aaKnown RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 ZER1Q7Z7L7 766 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 CACTIN-AS1Q8N1I8 211 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 DEFB119Q8N690 84 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 ZNF675Q8TD23 568 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 GPA33Q99795 319 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 PINK1Q9BXM7 581 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 NECTIN3Q9NQS3 549 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 POT1Q9NUX5 634 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 DNAJC27Q9NZQ0 273 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 SLC13A4Q9UKG4 626 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 CPSF4LA6NMK7 179 aaKnown RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 MAGEA8P43361 318 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 C21orf59P57076 290 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 VSX2P58304 361 aaPredicted RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 UBE2IP63279 158 aaKnown RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 TRMT12Q53H54 448 aaKnown RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 MFSD12Q6NUT3 480 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 BAHD1Q8TBE0 780 aaPredicted RBP15.3■□□□□ 0.04
COL4A1-204ENST00000543140 LGALS12Q96DT0 336 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 TPSD1Q9BZJ3 242 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 GIN1Q9NXP7 522 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 NTNG1Q9Y2I2 539 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 CHST2Q9Y4C5 530 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 SLC22A7Q9Y694 548 aa15.3■□□□□ 0.04
COL4A1-204ENST00000543140 CLDN24A6NM45 220 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 ADORA3P0DMS8 318 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 OPRL1P41146 370 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 RANBP1P43487 201 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 TAS2R41P59536 307 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 TMED1Q13445 227 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 FAM214AQ32MH5 1076 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 CLIP4Q8N3C7 705 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 TMEM52Q8NDY8 209 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 FCGR1BQ92637 280 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 SLC38A4Q969I6 547 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 BORCS5Q969J3 196 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 PRRC1Q96M27 445 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 MS4A4EQ96PG1 132 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 TRNT1Q96Q11 434 aaKnown RBP15.29■□□□□ 0.04
COL4A1-204ENST00000543140 TWSG1Q9GZX9 223 aa15.29■□□□□ 0.04
COL4A1-204ENST00000543140 CCDC85CA6NKD9 419 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 B4DGG1 531 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 CASC3O15234 703 aaKnown RBP15.28■□□□□ 0.04
COL4A1-204ENST00000543140 NADKO95544 446 aaPredicted RBP15.28■□□□□ 0.04
COL4A1-204ENST00000543140 TP53P04637 393 aaPredicted RBP15.28■□□□□ 0.04
COL4A1-204ENST00000543140 CTSBP07858 339 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 CPMP14384 443 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 DEFB110Q30KQ9 67 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 CCNJQ5T5M9 372 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 CASP12Q6UXS9 341 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 C11orf74Q86VG3 221 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 CROCCP3Q8IVE0 287 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 TCEANCQ8N8B7 351 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 RSC1A1Q92681 617 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 LIPT1Q9Y234 373 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 EFCAB9A8MZ26 197 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 MAGEB3O15480 346 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 ASNA1O43681 348 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 MPZL2O60487 215 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 GADD45AP24522 165 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 SHC2P98077 582 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 TEKQ02763 1124 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 HHEXQ03014 270 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 COL19A1Q14993 1142 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 INAVAQ3KP66 663 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 SLX4IPQ5VYV7 408 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 C16orf87Q6PH81 154 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 MORN4Q8NDC4 146 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 OR52P1PQ8NH57 321 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 PLEKHA8Q96JA3 519 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 TVP23BQ9NYZ1 205 aa15.28■□□□□ 0.04
COL4A1-204ENST00000543140 A0A0J9YY10 115 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 FGF17O60258 216 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 PORP16435 677 aaPredicted RBP15.27■□□□□ 0.04
COL4A1-204ENST00000543140 ZNF10P21506 573 aaPredicted RBP15.27■□□□□ 0.04
COL4A1-204ENST00000543140 TRHRP34981 398 aaPredicted RBP15.27■□□□□ 0.04
COL4A1-204ENST00000543140 SOX18P35713 384 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 RNF144AP50876 292 aaPredicted RBP15.27■□□□□ 0.04
COL4A1-204ENST00000543140 CCR5P51681 352 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 DUSP5Q16690 384 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 FAM92BQ6ZTR7 304 aa15.27■□□□□ 0.04
COL4A1-204ENST00000543140 CSNK1A1LQ8N752 337 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms