RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LIPAP38571 399 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 ETV6P41212 452 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 SRP54P61011 504 aaKnown RBP9.27□□□□□ -0.93
SS18-205ENST00000542420 COPZ1P61923 177 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 EFNB1P98172 346 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 CDK5Q00535 292 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 ST3GAL3Q11203 375 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 ATP1A4Q13733 1029 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 SF3B4Q15427 424 aaKnown RBP eCLIP9.27□□□□□ -0.934e-8■■■□□ 18.5
SS18-205ENST00000542420 ARHGAP11BQ3KRB8 267 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 DEF8Q6ZN54 512 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 RNF44Q7L0R7 432 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 ABI3BPQ7Z7G0 1075 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 BPHLQ86WA6 291 aaPredicted RBP9.27□□□□□ -0.93
SS18-205ENST00000542420 OR2L13Q8N349 312 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 MFSD4AQ8N468 514 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 PROKR2Q8NFJ6 384 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 SLC7A13Q8TCU3 470 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 GPBAR1Q8TDU6 330 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 TMEM80Q96HE8 168 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 MSLNLQ96KJ4 702 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 OR2A14Q96R47 310 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 OR2A5Q96R48 311 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 RPP25Q9BUL9 199 aaKnown RBP9.27□□□□□ -0.93
SS18-205ENST00000542420 TAPBPLQ9BX59 468 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 MROQ9BYG7 248 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 DCSTAMPQ9H295 470 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 SLC38A1Q9H2H9 487 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 KRCC1Q9NPI7 259 aaPredicted RBP9.27□□□□□ -0.93
SS18-205ENST00000542420 GPR27Q9NS67 375 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 USP36Q9P275 1121 aaKnown RBP9.27□□□□□ -0.93
SS18-205ENST00000542420 C5AR2Q9P296 337 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 SEC14L4Q9UDX3 406 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 SLC13A4Q9UKG4 626 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 MMP17Q9ULZ9 603 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 UGT2A1Q9Y4X1 527 aa9.27□□□□□ -0.93
SS18-205ENST00000542420 KRBA1A5PL33 1030 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 C2orf74A8MZ97 194 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 CCRL2O00421 344 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 PGRMC2O15173 223 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 SLC31A1O15431 190 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 SEMA7AO75326 666 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ERAL1O75616 437 aaKnown RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 OR5F1O95221 314 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 TNFP01375 233 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 STSP08842 583 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 RGS6P49758 472 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 SMSP52788 366 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 MLLT10P55197 1068 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 TSPAN31Q12999 210 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 LASP1Q14847 261 aaKnown RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 DECR1Q16698 335 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ZSWIM7Q19AV6 140 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FAM214AQ32MH5 1076 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ZNF404Q494X3 552 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 KLHL22Q53GT1 634 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 PODNL1Q6PEZ8 512 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 Q6ZPB1 254 aaPredicted RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 RASSF6Q6ZTQ3 369 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 IGFN1Q86VF2 1251 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 CACUL1Q86Y37 369 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 OR4K14Q8NGD5 310 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 OR4D11Q8NGI4 311 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 NDNFQ8TB73 568 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 STACQ99469 402 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 MND1Q9BWT6 205 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 GSDMCQ9BYG8 508 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 CHRDQ9H2X0 955 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 MTHFD2LQ9H903 347 aaPredicted RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 MAN2C1Q9NTJ4 1040 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ACTR10Q9NZ32 417 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 KCMF1Q9P0J7 381 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FBXL21Q9UKT6 434 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FBXW2Q9UKT8 454 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 CARD8Q9Y2G2 431 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 SNX11Q9Y5W9 270 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 A0A075B6Q4 140 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 POM121BA6NF01 834 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 WASHC1A8K0Z3 465 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 PRAMEF26H0Y7S4 382 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 BTN3A3O00478 584 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 FMO6PO60774 539 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 SCG5P05408 212 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 UGT2B7P16662 529 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 CPN2P22792 545 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 C21orf33P30042 268 aaPredicted RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 ACTR1BP42025 376 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 STAT5AP42229 794 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 PCYT1AP49585 367 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 PPP5CP53041 499 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ACTR1AP61163 376 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 VBP1P61758 197 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 UBE2IP63279 158 aaKnown RBP9.26□□□□□ -0.93
SS18-205ENST00000542420 BTN3A2P78410 334 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 IFITM2Q01629 132 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ZNF45Q02386 682 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 ILF3Q12906 894 aaKnown RBP eCLIP9.26□□□□□ -0.93
SS18-205ENST00000542420 GPR19Q15760 415 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 INAVAQ3KP66 663 aa9.26□□□□□ -0.93
SS18-205ENST00000542420 GPAT3Q53EU6 434 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms