RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MRPS35P82673 323 aaKnown RBP13.44□□□□□ -0.26
VPS28-215ENST00000531924 SRYQ05066 204 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 ACSM2AQ08AH3 577 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 HEPACAMQ14CZ8 416 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 LTB4RQ15722 352 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 ACSM2BQ68CK6 577 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 CCDC116Q8IYX3 515 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 GBP7Q8N8V2 638 aaPredicted RBP13.44□□□□□ -0.26
VPS28-215ENST00000531924 RDH11Q8TC12 318 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 NINJ1Q92982 152 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 HGDQ93099 445 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 EXOSC8Q96B26 276 aaKnown RBP13.44□□□□□ -0.26
VPS28-215ENST00000531924 CNRIP1Q96F85 164 aaPredicted RBP13.44□□□□□ -0.26
VPS28-215ENST00000531924 WDYHV1Q96HA8 205 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 NODALQ96S42 347 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 ZNF382Q96SR6 550 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 GALNT9Q9HCQ5 603 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 RASSF1Q9NS23 344 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 ZNF639Q9UID6 485 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 MCM8Q9UJA3 840 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 DLGAP4Q9Y2H0 992 aa13.44□□□□□ -0.26
VPS28-215ENST00000531924 SPG11Q96JI7 2443 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 ABCB7O75027 752 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 UGT2B11O75310 529 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 ERN1O75460 977 aaKnown RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 CBX7O95931 251 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 IL3P08700 152 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 TMIGD3P0DMS9 266 aaPredicted RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 ATP5F1P24539 256 aaPredicted RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 TACR1P25103 407 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 IL12BP29460 328 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 CPA2P48052 419 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 AGFG1P52594 562 aaKnown RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 ZNF136P52737 540 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 PSPHP78330 225 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 MRPS22P82650 360 aaKnown RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 EFR3AQ14156 821 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 FBXL19-AS1Q494R0 122 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 SPIN4Q56A73 249 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 TCHHL1Q5QJ38 904 aaPredicted RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 ZNF678Q5SXM1 525 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 DESI1Q6ICB0 168 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 TMEM81Q6P7N7 255 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 AAGABQ6PD74 315 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 SCIMPQ6UWF3 145 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 LCA5Q86VQ0 697 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 IFNEQ86WN2 208 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 SLC22A9Q8IVM8 553 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 CDC26Q8NHZ8 85 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 ZPLD1Q8TCW7 415 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 TMBIM1Q969X1 311 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 ZNF681Q96N22 645 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 BBS4Q96RK4 519 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 ADOQ96SZ5 270 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 TM9SF2Q99805 663 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 FOXC2Q99958 501 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 SH3GL2Q99962 352 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 CCM2LQ9NUG4 571 aaPredicted RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 TAS2R10Q9NYW0 307 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 TMEM216Q9P0N5 145 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 FETUBQ9UGM5 382 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 ST6GALNAC2Q9UJ37 374 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 DKKL1Q9UK85 242 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 EXO1Q9UQ84 846 aaKnown RBP13.43□□□□□ -0.26
VPS28-215ENST00000531924 OR10H1Q9Y4A9 318 aa13.43□□□□□ -0.26
VPS28-215ENST00000531924 MBD3L4A6NDZ8 208 aaPredicted RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 MBD3L3A6NE82 208 aaPredicted RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 OR6C70A6NIJ9 312 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 MBD3L5A6NJ08 208 aaPredicted RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 KDM4EB2RXH2 506 aaPredicted RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 TO15178 435 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 CRCPO75575 148 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 IL18BPO95998 194 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 ENO1P06733 434 aaKnown RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 SBK3P0C264 359 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 CD99P14209 185 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 CPN1P15169 458 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 IMPDH1P20839 514 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 MPIP34949 423 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 EMDP50402 254 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 BTKQ06187 659 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 LCP2Q13094 533 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 UNC50Q53HI1 259 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 SPDYAQ5MJ70 313 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 DCST1Q5T197 706 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 TIFABQ6ZNK6 161 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 LARP4Q71RC2 724 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS28-215ENST00000531924 TRMT10CQ7L0Y3 403 aaKnown RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 CHMP1BQ7LBR1 199 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 CDC20BQ86Y33 519 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 PLCZ1Q86YW0 608 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 TRIM42Q8IWZ5 723 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 IFT20Q8IY31 132 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 SIMC1Q8NDZ2 872 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 OR9A2Q8NGT5 310 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 MBD3L2Q8NHZ7 208 aaPredicted RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 ZNF675Q8TD23 568 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 KAT2AQ92830 837 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 CTHRC1Q96CG8 243 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 ERP27Q96DN0 273 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms