RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MED12Q93074 2177 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 FLNAP21333 2647 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 PRAMEF25A6NGN4 478 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 FRG2CA6NGY1 282 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 PPP6CO00743 305 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 TO15178 435 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 UGT2B11O75310 529 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 CBR3O75828 277 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 SBK3P0C264 359 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 TMIGD3P0DMS9 266 aaPredicted RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 CYP4B1P13584 511 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 DRD5P21918 477 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 CNTFP26441 200 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 GCKP35557 465 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 DEKP35659 375 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 PPICP45877 212 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 SLCO1A2P46721 670 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 EMDP50402 254 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 SERPINB9P50453 376 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 AGFG1P52594 562 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 DGKQP52824 942 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 TRA2BP62995 288 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 FOXD4Q12950 439 aaPredicted RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 LTB4RQ15722 352 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 TRMT12Q53H54 448 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 RPS27LQ71UM5 84 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 TMEM151AQ8N4L1 468 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 WDSUB1Q8N9V3 476 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 ADCY4Q8NFM4 1077 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 OR52R1Q8NGF1 315 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 ZNF675Q8TD23 568 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 SELENOMQ8WWX9 145 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 CNRIP1Q96F85 164 aaPredicted RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 ZFP3Q96NJ6 502 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 UCN2Q96RP3 112 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 PAFAH2Q99487 392 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 TUBA1CQ9BQE3 449 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 SFXN3Q9BWM7 321 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 FAIM2Q9BWQ8 316 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 SERHLQ9NQF3 203 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 KLRF1Q9NZS2 232 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 PRODH2Q9UF12 536 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 TRPS1Q9UHF7 1281 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 DMGDHQ9UI17 866 aaKnown RBP10.33□□□□□ -0.76
VPS28-214ENST00000531032 ZNF180Q9UJW8 692 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 ZNF225Q9UK10 706 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 PSME2Q9UL46 239 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 MAPRE3Q9UPY8 281 aa10.33□□□□□ -0.76
VPS28-214ENST00000531032 VPS13CQ709C8 3753 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 C2orf72A6NCS6 295 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 OR6C70A6NIJ9 312 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 A8MT66 165 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 POC1B-GALNT4F8VUJ3 575 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 ATE1O95260 518 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 RAF1P04049 648 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 PCSK2P16519 638 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 HOXB4P17483 251 aaPredicted RBP10.32□□□□□ -0.76
VPS28-214ENST00000531032 CDH13P55290 713 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 GFRA1P56159 465 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 ADAM8P78325 824 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 MRPS35P82673 323 aaKnown RBP10.32□□□□□ -0.76
VPS28-214ENST00000531032 HMGCS1Q01581 520 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 FOXF2Q12947 444 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 FAM219BQ5XKK7 198 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 FAM180BQ6P0A1 224 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 ENPP6Q6UWR7 440 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 C1orf52Q8N6N3 182 aaKnown RBP10.32□□□□□ -0.76
VPS28-214ENST00000531032 OR14L1PQ8NHC6 308 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 UHMK1Q8TAS1 419 aaKnown RBP10.32□□□□□ -0.76
VPS28-214ENST00000531032 LINC01560Q8TB33 94 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 DCAKDQ8WVC6 231 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 TMBIM1Q969X1 311 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 ERP27Q96DN0 273 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 SLC35A4Q96G79 324 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 BTBD9Q96Q07 612 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 TM9SF2Q99805 663 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 G6PC3Q9BUM1 346 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 PLEKHF2Q9H8W4 249 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 NMRK1Q9NWW6 199 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 EHD3Q9NZN3 535 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 UTS2RQ9UKP6 389 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 RPH3AQ9Y2J0 694 aaPredicted RBP10.32□□□□□ -0.76
VPS28-214ENST00000531032 GPR55Q9Y2T6 319 aaPredicted RBP10.32□□□□□ -0.76
VPS28-214ENST00000531032 ZNF780BQ9Y6R6 833 aa10.32□□□□□ -0.76
VPS28-214ENST00000531032 A0A087WUV0 522 aaPredicted RBP10.31□□□□□ -0.76
VPS28-214ENST00000531032 EXOC1LA0A1B0GW35 172 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 CLCA1A8K7I4 914 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 H0Y3Z8 333 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 ABCB7O75027 752 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 ERN1O75460 977 aaKnown RBP10.31□□□□□ -0.76
VPS28-214ENST00000531032 RCBTB2O95199 551 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 HSD3B1P14060 373 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 FOSL1P15407 271 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 TSPAN8P19075 237 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 HSD3B2P26439 372 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 SRD5A2P31213 254 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 ALDH9A1P49189 494 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 LHX2P50458 406 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 CLCQ05315 142 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 DEFB113Q30KQ7 82 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms