RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 NUP210LQ5VU65 1888 aa6.91□□□□□ -1.3
CD44-228ENST00000528455 CACNA1GO43497 2377 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 LOC400499M0QZD8 3231 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 TCRBV16S1A1N1A0A5B0 115 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ASPDHA6ND91 283 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 EVPLLA8MZ36 301 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 IDSB3KWA1 339 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 H3BS24 57 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 MRASO14807 208 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 FGF17O60258 216 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PLOD3O60568 738 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 JRKO75564 520 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PRKRAO75569 313 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 CBX6O95503 412 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ANP32DO95626 131 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 CPSF4O95639 269 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 HEXBP07686 556 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 C8orf89P0DMQ9 161 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 GPX2P18283 190 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PPIBP23284 216 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 ITPKBP27987 946 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PTPN6P29350 595 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 NTSP30990 170 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 CPOXP36551 454 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 STT3AP46977 705 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 CCT3P49368 545 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 NCBP2P52298 156 aaKnown RBP eCLIP6.9□□□□□ -1.3
CD44-228ENST00000528455 TXNL4AP83876 142 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 NFYCQ13952 458 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PRICKLE4Q2TBC4 344 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 TRMT5Q32P41 509 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 TIGD2Q4W5G0 525 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 RUNDC3AQ59EK9 446 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 BROXQ5VW32 411 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 NANOGP8Q6NSW7 305 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ZCCHC12Q6PEW1 402 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 SLC2A7Q6PXP3 512 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 C16orf89Q6UX73 402 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 TMEM64Q6YI46 380 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 OR4N5Q8IXE1 308 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 METTL27Q8N6F8 245 aaPredicted RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 OR2Y1Q8NGV0 311 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 SUN3Q8TAQ9 357 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ZNF675Q8TD23 568 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 KCNE4Q8WWG9 221 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 METTL21AQ8WXB1 218 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 DAZLQ92904 295 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 RIT1Q92963 219 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 CIDECQ96AQ7 238 aaPredicted RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 MOAP1Q96BY2 351 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 RCN3Q96D15 328 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ELP4Q96EB1 424 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 VPS50Q96JG6 964 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 HRASLS5Q96KN8 279 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ANKRD27Q96NW4 1050 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 DGAT2Q96PD7 388 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 NPAS2Q99743 824 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 GPATCH1Q9BRR8 931 aaKnown RBP6.9□□□□□ -1.3
CD44-228ENST00000528455 INPP5KQ9BT40 448 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 EFHD1Q9BUP0 239 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 DPH1Q9BZG8 443 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 VN1R1Q9GZP7 353 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 NANOGQ9H9S0 305 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.9□□□□□ -1.3
CD44-228ENST00000528455 SLAMF8Q9P0V8 285 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 C5AR2Q9P296 337 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PTGFRNQ9P2B2 879 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 ZNF639Q9UID6 485 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 VPS4AQ9UN37 437 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PADI2Q9Y2J8 665 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 PCDHGA6Q9Y5G7 932 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 SDK2Q58EX2 2172 aa6.9□□□□□ -1.3
CD44-228ENST00000528455 LOC102723996A0A087X1L8 192 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TRBV5-3A0A0A0MS03 114 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 C15orf38-AP3S2A0A0A6YYH1 394 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TEX51A0A1B0GUA7 166 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SCO2A0A1W2PP80 73 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SHISA3A0PJX4 238 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 PMS2P1A4D2B8 440 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 OR2W5A6NFC9 320 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 EIF4E1BA6NMX2 242 aaKnown RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 C9JVG2 144 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CLIC1O00299 241 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 SHOXO15266 292 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 GYG2O15488 501 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 KLK10O43240 276 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 EMC8O43402 210 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 KLF4O43474 513 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 RAD1O60671 282 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 ALOX12BO75342 701 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 KRT75O95678 551 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 C6orf47O95873 294 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 TP53P04637 393 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 HOXB9P17482 250 aaPredicted RBP6.89□□□□□ -1.31
CD44-228ENST00000528455 TNNI3P19429 210 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MAOAP21397 527 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 S1PR1P21453 382 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 MMP11P24347 488 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 CD96P40200 585 aa6.89□□□□□ -1.31
CD44-228ENST00000528455 STAT5AP42229 794 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms