RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 A4GNTQ9UNA3 340 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 SDK1Q7Z5N4 2213 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 TRBV4-1A0A0J9YWV2 114 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 SYT5O00445 386 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 FCMRO60667 390 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 AGXTP21549 392 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 GPR3P46089 330 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 ARHGAP11BQ3KRB8 267 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 RBM44Q6ZP01 1051 aaKnown RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 TSPYL5Q86VY4 417 aaPredicted RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 CCDC71Q8IV32 467 aaPredicted RBP19.35■□□□□ 0.69
VPS28-209ENST00000528142 HRASLS5Q96KN8 279 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 FUZQ9BT04 418 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 ADNPQ9H2P0 1102 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 PIGUQ9H490 435 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 ADAP2Q9NPF8 381 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 ENAMQ9NRM1 1142 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 SLC9A8Q9Y2E8 581 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 POFUT2Q9Y2G5 429 aa19.35■□□□□ 0.69
VPS28-209ENST00000528142 TTC28Q96AY4 2481 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 THADAQ6YHU6 1953 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 H3BMH7 237 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 ALPPP05187 535 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 MAP3K8P41279 467 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 ARRB1P49407 418 aaPredicted RBP19.34■□□□□ 0.69
VPS28-209ENST00000528142 IL5RAQ01344 420 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 TOP3AQ13472 1001 aaPredicted RBP19.34■□□□□ 0.69
VPS28-209ENST00000528142 CNPY1Q3B7I2 92 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 ZNF311Q5JNZ3 666 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 MLIPQ5VWP3 458 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 FRRS1Q6ZNA5 592 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 DGAT2L6Q6ZPD8 337 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 OR6C4Q8NGE1 309 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 OR6T1Q8NGN1 323 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 TMIGD2Q96BF3 282 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 PEX11GQ96HA9 241 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 APOL4Q9BPW4 351 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 YIPF3Q9GZM5 350 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 SEMA5BQ9P283 1151 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 CHST2Q9Y4C5 530 aa19.34■□□□□ 0.69
VPS28-209ENST00000528142 BLACEA4D250 179 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 TGFBR3LH3BV60 316 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 HRO43593 1189 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 CTNSO60931 367 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 H1F0P07305 194 aaKnown RBP19.33■□□□□ 0.69
VPS28-209ENST00000528142 MYF5P13349 255 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 GNSP15586 552 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 MAPK10P53779 464 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 EMP3P54852 163 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 IGLV3-21P80748 117 aaPredicted RBP19.33■□□□□ 0.69
VPS28-209ENST00000528142 MAT1AQ00266 395 aaKnown RBP19.33■□□□□ 0.69
VPS28-209ENST00000528142 ZCCHC12Q6PEW1 402 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 ZNF773Q6PK81 442 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 VRK2Q86Y07 508 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 C1orf210Q8IVY1 113 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 CNIH3Q8TBE1 160 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 ADAMTS18Q8TE60 1221 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 ZNF566Q969W8 418 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 RBCK1Q9BYM8 510 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 CLDN16Q9Y5I7 305 aa19.33■□□□□ 0.69
VPS28-209ENST00000528142 DUX1O43812 170 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 GASTP01350 101 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 ELAVL4P26378 380 aaKnown RBP19.32■□□□□ 0.68
VPS28-209ENST00000528142 CD1CP29017 333 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 GPLD1P80108 840 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 CSTF1Q05048 431 aaKnown RBP19.32■□□□□ 0.68
VPS28-209ENST00000528142 MAP4K2Q12851 820 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 PIN1Q13526 163 aaPredicted RBP19.32■□□□□ 0.68
VPS28-209ENST00000528142 KCNAB1Q14722 419 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 SEC23BQ15437 767 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 NPTX1Q15818 432 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 SYT16Q17RD7 645 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 TYW3Q6IPR3 259 aaKnown RBP19.32■□□□□ 0.68
VPS28-209ENST00000528142 DHRS4L2Q6PKH6 230 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 KANSL1Q7Z3B3 1105 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 PLXDC1Q8IUK5 500 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 ZNF595Q8IYB9 648 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 TAGAPQ8N103 731 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 CDRT4Q8N9R6 151 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 SDF2Q99470 211 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 ARHGDIGQ99819 225 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 MTHFD2LQ9H903 347 aaPredicted RBP19.32■□□□□ 0.68
VPS28-209ENST00000528142 DUSP22Q9NRW4 184 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 TMEM9Q9P0T7 183 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 PILRBQ9UKJ0 227 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 TMEM184BQ9Y519 407 aaPredicted RBP19.32■□□□□ 0.68
VPS28-209ENST00000528142 LAMA1P25391 3075 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 SLC1A7O00341 560 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 LAMTOR5O43504 91 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 PCDHGA12O60330 932 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 CBX7O95931 251 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 CCDC159P0C7I6 412 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 S1PR1P21453 382 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 PRKAR1BP31321 381 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 CSF2RBP32927 897 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 SMIM11AP58511 58 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 GABARAPL2P60520 117 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 HSD11B2P80365 405 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 HPCAP84074 193 aa19.32■□□□□ 0.68
VPS28-209ENST00000528142 GRM7Q14831 915 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms