RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 YBEYP58557 167 aaPredicted RBP3.16□□□□□ -1.9
CD44-215ENST00000525241 AP1B1Q10567 949 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 ZIC1Q15915 447 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 GSG1Q2KHT4 349 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 LIPKQ5VXJ0 399 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 ETFRF1Q6IPR1 90 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 RABEPKQ7Z6M1 372 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 LRRC17Q8N6Y2 441 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 CCNYQ8ND76 341 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 ZNF397Q8NF99 534 aaPredicted RBP3.16□□□□□ -1.9
CD44-215ENST00000525241 OR52J3Q8NH60 311 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 PHYHIPQ92561 330 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 CCDC51Q96ER9 411 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 MBD2Q9UBB5 411 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 DNPEPQ9ULA0 475 aa3.16□□□□□ -1.9
CD44-215ENST00000525241 STRAPQ9Y3F4 350 aaKnown RBP3.16□□□□□ -1.9
CD44-215ENST00000525241 A8MX80 341 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 STK17BO94768 372 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 TOXO94900 526 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 CXCL10P02778 98 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 PGK2P07205 417 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 DUX4L4P0CJ87 422 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 SLC35E2P0CK97 266 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 CYP11B1P15538 503 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 IDSP22304 550 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 AHCYP23526 432 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 SLC6A8P48029 635 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 NT5C2P49902 561 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 NDPQ00604 133 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 PPP2R5CQ13362 524 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 CARTPTQ16568 116 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 ZSWIM7Q19AV6 140 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 AGKQ53H12 422 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 PRR5LQ6MZQ0 368 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 UNC5CLQ8IV45 518 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 BATF2Q8N1L9 274 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 ZNF525Q8N782 197 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 Q8N9G6 341 aaPredicted RBP3.15□□□□□ -1.91
CD44-215ENST00000525241 LEMD2Q8NC56 503 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 NDUFAF3Q9BU61 184 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 FTHL17Q9BXU8 183 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 IKZF5Q9H5V7 419 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 HOMER3Q9NSC5 361 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 ZNF275Q9NSD4 429 aaPredicted RBP3.15□□□□□ -1.91
CD44-215ENST00000525241 VNN3Q9NY84 501 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 KCNN3Q9UGI6 736 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 FETUBQ9UGM5 382 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 NTNG1Q9Y2I2 539 aa3.15□□□□□ -1.91
CD44-215ENST00000525241 KLF18A0A0U1RQI7 1052 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 SYCE3A1L190 88 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 LRIT2A6NDA9 550 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 GPAA1O43292 621 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 SDC3O75056 442 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 BCAS2O75934 225 aaPredicted RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 DUSP14O95147 198 aaKnown RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 IGSF6O95976 241 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 PROS1P07225 676 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 ALPIP09923 528 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 ZCCHC18P0CG32 403 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 CT45A10P0DMU9 189 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 BNIP1Q12981 228 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 NME3Q13232 169 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 BTG3Q14201 252 aaPredicted RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 ACSF3Q4G176 576 aaPredicted RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 PAN3Q58A45 887 aaKnown RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 RSBN1Q5VWQ0 802 aaPredicted RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 C2orf66Q6UXQ4 117 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 FAM9BQ8IZU0 186 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 NEK11Q8NG66 645 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 RFESDQ8TAC1 157 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 TFB1MQ8WVM0 346 aaKnown RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 BADQ92934 168 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 DNAJA3Q96EY1 480 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 C11orf24Q96F05 449 aaPredicted RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 YTHDF1Q9BYJ9 559 aaKnown RBP3.14□□□□□ -1.91
CD44-215ENST00000525241 THAP9Q9H5L6 903 aa3.14□□□□□ -1.91
CD44-215ENST00000525241 FRG2CA6NGY1 282 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 NPIPA2E9PIF3 369 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 C11orf98E9PRG8 122 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 G3V3Y1 287 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 SLC17A2O00624 439 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 LCMT2O60294 686 aaKnown RBP3.13□□□□□ -1.91
CD44-215ENST00000525241 SLC2A10O95528 541 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 LY6G6DO95868 133 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 GHRP10912 638 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 IL2RGP31785 369 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 MAGEA4P43358 317 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 ALDH3B2P48448 385 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 METAP1P53582 386 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 LRIT3Q3SXY7 679 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 TTC31Q49AM3 519 aaPredicted RBP3.13□□□□□ -1.91
CD44-215ENST00000525241 FAM159AQ6UWV7 190 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 TSEN54Q7Z6J9 526 aaKnown RBP3.13□□□□□ -1.91
CD44-215ENST00000525241 GPBP1Q86WP2 473 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 GPR137CQ8N3F9 429 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 VSIG2Q96IQ7 327 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 OR5M11Q96RB7 305 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 TSPAN18Q96SJ8 248 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 SYTL2Q9HCH5 934 aa3.13□□□□□ -1.91
CD44-215ENST00000525241 FAM114A2Q9NRY5 505 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms