RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 H0YGG7 62 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 KIAA0513O60268 411 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 CDK1P06493 297 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 GKN3PP0CG01 181 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 XCR1P46094 333 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 GP2P55259 537 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 ARF3P61204 181 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 TRA2BP62995 288 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 MRPS15P82914 257 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 KIR2DS3Q14952 304 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 EXOSC7Q15024 291 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 CCDC157Q569K6 752 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 SLC30A6Q6NXT4 461 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 FAM111BQ6SJ93 734 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 KLHL17Q6TDP4 642 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 UBE2J2Q8N2K1 259 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 MMABQ96EY8 250 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 NECTIN4Q96NY8 510 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 DDX31Q9H8H2 851 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 FBRSQ9HAH7 460 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ERVK-11Q9UQG0 969 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 RDH16O75452 317 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 OXSR1O95747 527 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 IMPDH2P12268 514 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 UGT2B7P16662 529 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 NDUFV2P19404 249 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 KCNJ5P48544 419 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 FXNQ16595 210 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 MPEG1Q2M385 716 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 GTF2IRD2BQ6EKJ0 949 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 FAM131AQ6UXB0 335 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 CAMKMTQ7Z624 323 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 GTF2IRD2Q86UP8 949 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 LINC00471Q8N535 108 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 MFSD9Q8NBP5 474 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 SLC16A11Q8NCK7 471 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 OR13H1Q8NG92 308 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 RHOXF1Q8NHV9 184 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 SLC7A13Q8TCU3 470 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 PEX11GQ96HA9 241 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 DIRAS2Q96HU8 199 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 C8orf33Q9H7E9 229 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 PNO1Q9NRX1 252 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 PAIP2BQ9ULR5 123 aaKnown RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 PEX16Q9Y5Y5 336 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 SERTM1A2A2V5 107 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 MFN2O95140 757 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 PTHP01270 115 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 JUNBP17275 347 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 SOX3P41225 446 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 TUBA1BP68363 451 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 DLX2Q07687 328 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 SAXO2Q658L1 398 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ZNF793Q6ZN11 406 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 TUBA1AQ71U36 451 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 TP53I13Q8NBR0 393 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 C19orf18Q8NEA5 215 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 OR4C6Q8NH72 309 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ADAMTS16Q8TE57 1224 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 HPS1Q92902 700 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ARSGQ96EG1 525 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 MND1Q9BWT6 205 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ASPNQ9BXN1 380 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 GPN2Q9H9Y4 310 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 SLC6A20Q9NP91 592 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 MALT1Q9UDY8 824 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 PSORS1C1Q9UIG5 152 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 CFL2Q9Y281 166 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.56□□□□□ -0.88
MCF2-209ENST00000520602 NAALAD2Q9Y3Q0 740 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 AP1M2Q9Y6Q5 423 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 CKAP5Q14008 2032 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 SCN3AQ9NY46 2000 aa9.56□□□□□ -0.88
MCF2-209ENST00000520602 BRCA2P51587 3418 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 A0A0A6YYC8 382 aaPredicted RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 KRBA1A5PL33 1030 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 I3L1I5 382 aaPredicted RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 CDRT1O95170 752 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 CPNE6O95741 557 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 GTF2E2P29084 291 aaKnown RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 TGFBR1P36897 503 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 PCDH1Q08174 1060 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 ADPRMQ3LIE5 342 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 FLYWCH1Q4VC44 716 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 PYDC2Q56P42 97 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 TCTN3Q6NUS6 607 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 TMPRSS11AQ6ZMR5 421 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 GATSQ8NAP1 163 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 GNPDA2Q8TDQ7 276 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 TRUB1Q8WWH5 349 aaKnown RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 PIK3R3Q92569 461 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 WDR34Q96EX3 536 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 CNRIP1Q96F85 164 aaPredicted RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 TGM7Q96PF1 710 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 GAS2L1Q99501 681 aaPredicted RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 DUSP21Q9H596 190 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 THSD1Q9NS62 852 aa9.55□□□□□ -0.88
MCF2-209ENST00000520602 EXO1Q9UQ84 846 aaKnown RBP9.55□□□□□ -0.88
MCF2-209ENST00000520602 MRPS7Q9Y2R9 242 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms