RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C3P1Q6ZMU1 363 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 GALNT10Q86SR1 603 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF605Q86T29 641 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 MECRQ9BV79 373 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 NOL11Q9H8H0 719 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 ENAMQ9NRM1 1142 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 PCDHGA7Q9Y5G6 932 aa7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 DNMT3AQ9Y6K1 912 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 USP9YO00507 2555 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-219ENST00000514096 CACNA1CQ13936 2221 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ISPDA4D126 451 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 STX16-NPEPL1H3BU86 382 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 LDB3O75112 727 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF888P0CJ79 500 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 KITP10721 976 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 MAOAP21397 527 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 FBLP22087 321 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 SHC2P98077 582 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 MC2RQ01718 297 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ACVR1Q04771 509 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 PRDX1Q06830 199 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 RTP5Q14D33 572 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TLR1Q15399 786 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 KLHL26Q53HC5 615 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ZCCHC12Q6PEW1 402 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 IGFN1Q86VF2 1251 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 EID3Q8N140 333 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 STT3BQ8TCJ2 826 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 CHPT1Q8WUD6 406 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TSLPQ969D9 159 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF768Q9H5H4 540 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ARL8BQ9NVJ2 186 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ANKMY1Q9P2S6 941 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 BAG5Q9UL15 447 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 PCDHGA9Q9Y5G4 932 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 CSAG2Q9Y5P2 127 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 CORINQ9Y5Q5 1042 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ATP6AP2A0A1C7CYW4 349 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 A1L4Q6 167 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 F8W036 122 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC22A1O15245 554 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ATP6AP2O75787 350 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 PDGFAP04085 211 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 GSNP06396 782 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 BCL6P41182 706 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 RNF144AP50876 292 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 BTG2P78543 158 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 RELQ04864 619 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 NAB1Q13506 487 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 KIR2DS3Q14952 304 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TOR1AIP1Q5JTV8 583 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 CYHR1Q6ZMK1 362 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 NET1Q7Z628 596 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 S100A7AQ86SG5 101 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ADCK1Q86TW2 530 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 PM20D2Q8IYS1 436 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 NKAPQ8N5F7 415 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 OR52B6Q8NGF0 335 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 METTL21AQ8WXB1 218 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 LRRC39Q96DD0 335 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TSPAN17Q96FV3 270 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TCTN2Q96GX1 697 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 LINC00615Q96LM1 132 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 GAL3ST4Q96RP7 486 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 KCNA7Q96RP8 456 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TMEM121BQ9BXQ6 578 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 KCNN2Q9H2S1 579 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ANKHQ9HCJ1 492 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ZDHHC18Q9NUE0 388 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 DIMT1Q9UNQ2 313 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 MAPRE3Q9UPY8 281 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 ERGIC3Q9Y282 383 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 TP53TG5Q9Y2B4 290 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 MAST4O15021 2626 aa7.42□□□□□ -1.22
LIMCH1-219ENST00000514096 PRR19A6NJB7 356 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CES2O00748 559 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CREG1O75629 220 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ENO3P13929 434 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 SSR2P43308 183 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ERVPABLB-1P60509 514 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 GALNTL6Q49A17 601 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CMPK2Q5EBM0 449 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 C9orf152Q5JTZ5 239 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 BHLHB9Q6PI77 547 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TMEM64Q6YI46 380 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 TRMT10CQ7L0Y3 403 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 DHDDSQ86SQ9 333 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 C17orf82Q86X59 251 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CLEC1AQ8NC01 280 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 OR2L8Q8NGY9 312 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CLHC1Q8NHS4 586 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 OR4K3Q96R72 315 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC25A23Q9BV35 468 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 ADAM19Q9H013 955 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 UFSP2Q9NUQ7 469 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 NFKBIL1Q9UBC1 381 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 MARCOQ9UEW3 520 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 BAIAP2Q9UQB8 552 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 BTRCQ9Y297 605 aa7.41□□□□□ -1.22
LIMCH1-219ENST00000514096 CACNG2Q9Y698 323 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms