RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 SH2D2AQ9NP31 389 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 SEMA4BQ9NPR2 832 aaPredicted RBP6.59□□□□□ -1.35
USP46-208ENST00000512656 IGSF5Q9NSI5 407 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 AHSPQ9NZD4 102 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 GRHL1Q9NZI5 618 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 SPRR3Q9UBC9 169 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 MTRF1LQ9UGC7 380 aaKnown RBP6.59□□□□□ -1.35
USP46-208ENST00000512656 TMCO1Q9UM00 188 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 ZNF281Q9Y2X9 895 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 L3MBTL1Q9Y468 752 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 ASB4Q9Y574 426 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 CHCHD2Q9Y6H1 151 aaPredicted RBP6.59□□□□□ -1.35
USP46-208ENST00000512656 IKBKGQ9Y6K9 419 aa6.59□□□□□ -1.35
USP46-208ENST00000512656 HRNRQ86YZ3 2850 aaPredicted RBP6.59□□□□□ -1.36
USP46-208ENST00000512656 ABCA2Q9BZC7 2435 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 A0A096LPK6 155 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 A0A0A6YYD5 115 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 C15orf38-AP3S2A0A0A6YYH1 394 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 A0A1W2PR48 441 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 LRRC3CA6NJW4 275 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 GLOD5A6NK44 160 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 HRKO00198 91 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 SYT5O00445 386 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 GUCY1B2O75343 617 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 EEDO75530 441 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 TRAPPC6AO75865 159 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 FAM155BO75949 473 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 KLHL2O95198 593 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 CLDN9O95484 217 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 EPPINO95925 133 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 C1QAP02745 245 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 C2P06681 752 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 RBP1P09455 135 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 RFPL3SP0C7P2 107 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 MTHFD2P13995 350 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 PIK3R1P27986 724 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 TYK2P29597 1187 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 CASQ1P31415 396 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 DNAJA1P31689 397 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 UQCRC1P31930 480 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 PHBP35232 272 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 GCKP35557 465 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 BSGP35613 385 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 TRPC1P48995 793 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 SERPINB8P50452 374 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 ASCL1P50553 236 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 CCNG1P51959 295 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 HNRNPH2P55795 449 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 DLX5P56178 289 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 IFT88Q13099 833 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 PCBP2Q15366 365 aaKnown RBP eCLIP6.58□□□□□ -1.362e-6■■■■■ 40.3
USP46-208ENST00000512656 MROH9Q5TGP6 573 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 MRM1Q6IN84 353 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 DGAT2L6Q6ZPD8 337 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 LCNL1Q6ZST4 164 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 GOLGA7Q7Z5G4 137 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 KIF18BQ86Y91 864 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 LACC1Q8IV20 430 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 CENPLQ8N0S6 344 aaPredicted RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 RNF175Q8N4F7 328 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 ANKS4BQ8N8V4 417 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 L3MBTL4Q8NA19 623 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 C17orf47Q8NEP4 570 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 OR4K14Q8NGD5 310 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 GOT1L1Q8NHS2 421 aaPredicted RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 FBXO25Q8TCJ0 367 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 FAM222BQ8WU58 562 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 KCTD4Q8WVF5 259 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 HSPBAP1Q96EW2 488 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 FOXC2Q99958 501 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 POLDIP3Q9BY77 421 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 KRTAP4-9Q9BYQ8 210 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 SLC6A15Q9H2J7 730 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 CXorf21Q9HAI6 301 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 CPSF2Q9P2I0 782 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 ZNF629Q9UEG4 869 aaPredicted RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 CNOT11Q9UKZ1 510 aaKnown RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 CFL2Q9Y281 166 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 POLR3KQ9Y2Y1 108 aaPredicted RBP6.58□□□□□ -1.36
USP46-208ENST00000512656 NPFFR2Q9Y5X5 522 aa6.58□□□□□ -1.36
USP46-208ENST00000512656 HCFC1P51610 2035 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 TMPRSS11DO60235 418 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 SMIM24O75264 130 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 TRIM3O75382 744 aaPredicted RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 PRKRAO75569 313 aaKnown RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 CTAG2O75638 210 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 AIFM1O95831 613 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 HPNP05981 417 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 CD99P14209 185 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 PORP16435 677 aaPredicted RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 NAGAP17050 411 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 ENDOUP21128 410 aaKnown RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 BMP5P22003 454 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 DNASE1P24855 282 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 CEACAM8P31997 349 aaPredicted RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 TIMP3P35625 211 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 DEKP35659 375 aaKnown RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 CDK9P50750 372 aaKnown RBP6.57□□□□□ -1.36
USP46-208ENST00000512656 XKP51811 444 aa6.57□□□□□ -1.36
USP46-208ENST00000512656 IST1P53990 364 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms