RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DAZAP1Q96EP5 407 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 PORCNQ9H237 461 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PRDM12Q9H4Q4 367 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ELL3Q9HB65 397 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 C1GALT1Q9NS00 363 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SLC35D1Q9NTN3 355 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ARHGAP20Q9P2F6 1191 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 COPS7AQ9UBW8 275 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PCDHB11Q9Y5F2 797 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TAF6LQ9Y6J9 622 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 AKAP11Q9UKA4 1901 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 RGPD8O14715 1765 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 A6NIZ1 184 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NEURL1BA8MQ27 555 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SNRPGP15A8MWD9 76 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 RNASEK-C17orf49H0YIS7 233 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 H3BQ06 376 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 H7C4K7 107 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 AP4M1O00189 453 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CCSO14618 274 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SURF4O15260 269 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NOBOXO60393 691 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 B4GALT4O60513 344 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 JTBO76095 146 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LGI1O95970 557 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 GCGP01275 180 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MT-ND4P03905 459 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 RAF1P04049 648 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SERPINE2P07093 398 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SYPP08247 313 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LAMP2P13473 410 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 FABP4P15090 132 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 POU3F3P20264 500 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 GALP22466 123 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NDUFV1P49821 464 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HBG1P69891 147 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HBG2P69892 147 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 BOP1Q14137 746 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 OXA1LQ15070 435 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MGAT5BQ3V5L5 792 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 SYT6Q5T7P8 510 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 WSCD1Q658N2 575 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CLEC9AQ6UXN8 241 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ASRGL1Q7L266 308 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF627Q7L945 461 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PHF13Q86YI8 300 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 SPATA2LQ8IUW3 424 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 SERPINA12Q8IW75 414 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CYP4X1Q8N118 509 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CLIP4Q8N3C7 705 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF676Q8N7Q3 588 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 KDF1Q8NAX2 398 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 HJURPQ8NCD3 748 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 OR7D4Q8NG98 312 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NEIL3Q8TAT5 605 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 FNDC9Q8TBE3 224 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ARNTL2Q8WYA1 636 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 DCUN1D4Q92564 292 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 C14orf79Q96F83 325 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 MED8Q96G25 268 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NMNAT2Q9BZQ4 307 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 OR51M1Q9H341 326 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 GSX1Q9H4S2 264 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 FBRSQ9HAH7 460 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LRRC4CQ9HCJ2 640 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 B3GAT2Q9NPZ5 323 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 FAM217BQ9NTX9 383 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 CNTN6Q9UQ52 1028 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 LIPT1Q9Y234 373 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 YARS2Q9Y2Z4 477 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 DMRT1Q9Y5R6 373 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 B3GALT1Q9Y5Z6 326 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF541Q9H0D2 1346 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 KIAA1551Q9HCM1 1747 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NSG1A0A0A6YYJ2 146 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ALG1L2C9J202 215 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 ZNF878C9JN71 531 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 F5H5K5 113 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 G3V3Q6 166 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 H7BY64 318 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 TP53I11O14683 189 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 PER1O15534 1290 aaPredicted RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 RPP40O75818 363 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 OR2C1O95371 312 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CAPNS1P04632 268 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 KLK1P06870 262 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 H1F0P07305 194 aaKnown RBP3.41□□□□□ -1.86
USP53-205ENST00000509769 RETP07949 1114 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 GJB1P08034 283 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 UBL4AP11441 157 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HLA-DOBP13765 273 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 HSD17B1P14061 328 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 IFNGR1P15260 489 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CYP2F1P24903 491 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CD1BP29016 333 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 EPHA3P29320 983 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 CA5AP35218 305 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 NSG1P42857 185 aa3.41□□□□□ -1.86
USP53-205ENST00000509769 GLUD2P49448 558 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms