RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 MS4A4EQ96PG1 132 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 KCNJ15Q99712 375 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 DOHHQ9BU89 302 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 MCOLN1Q9GZU1 580 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 GABARAPL1Q9H0R8 117 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 EGLN3Q9H6Z9 239 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 MVB12BQ9H7P6 319 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 EMC7Q9NPA0 242 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SPHK1Q9NYA1 384 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF214Q9UL59 606 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 NOSIPQ9Y314 301 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 GXYLT2A0PJZ3 443 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 ANHXE9PGG2 379 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 E9PI62 339 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 YKT6O15498 198 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 RPP40O75818 363 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 RASGRP1O95267 797 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 FARS2O95363 451 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 TXNDC12O95881 172 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 OTCP00480 354 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 S100A9P06702 114 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 OR56A5P0C7T3 313 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 LIPCP11150 499 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 DAOP14920 347 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 AHCYP23526 432 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 RECQLP46063 649 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC3A1Q07837 685 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 TRAM2Q15035 370 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 TNFAIP8L2Q6P589 184 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 TRIM40Q6P9F5 258 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 HSDL2Q6YN16 418 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 CDH26Q8IXH8 852 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 PDZD9Q8IXQ8 264 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 LAS2Q8IYD9 372 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 BBS1Q8NFJ9 593 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 HUS1BQ8NHY5 278 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 THAP6Q8TBB0 222 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 RXFP4Q8TDU9 374 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 FCRL1Q96LA6 429 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 POLR2J3Q9H1A7 115 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC25A51Q9H1U9 297 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 FKRPQ9H9S5 495 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 C2orf42Q9NWW7 574 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 KLK11Q9UBX7 282 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 UBQLN1Q9UMX0 589 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 POFUT2Q9Y2G5 429 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 GSTK1Q9Y2Q3 226 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC6A5Q9Y345 797 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SIRT4Q9Y6E7 314 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 PRSS21Q9Y6M0 314 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 WDFY3Q8IZQ1 3526 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 SHANK3Q9BYB0 1731 aa6.86□□□□□ -1.31
LIMCH1-207ENST00000508466 FFAR1O14842 300 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC2A10O95528 541 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 NPBWR1P48145 328 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 ALDH9A1P49189 494 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 LIM2P55344 173 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 LILRA4P59901 499 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 PPP3R1P63098 170 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 HEPACAMQ14CZ8 416 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 EIF4HQ15056 248 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 PDZD11Q5EBL8 140 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 PABPC1L2AQ5JQF8 200 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 NCMAPQ5T1S8 102 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 PTRHD1Q6GMV3 140 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 PGBD2Q6P3X8 592 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 TRIM69Q86WT6 500 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 ADGRG2Q8IZP9 1017 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 MEIOBQ8N635 442 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 ARRDC4Q8NCT1 418 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 SEMA6DQ8NFY4 1073 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 OR14A16Q8NHC5 309 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 IMP4Q96G21 291 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 GPA33Q99795 319 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 PELOQ9BRX2 385 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 MED18Q9BUE0 208 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC19A3Q9BZV2 496 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 DNTTIP1Q9H147 329 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 SEC14L3Q9UDX4 400 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF230Q9UIE0 474 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 MOKQ9UQ07 419 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 RCE1Q9Y256 329 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 HS3ST4Q9Y661 456 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF646O15015 1829 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 MEIKINA0A087WXM9 373 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 TRBC2A0A5B9 178 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 CXorf65A6NEN9 183 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 CASTOR2A6NHX0 329 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 OR6C76A6NM76 312 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 AIPO00170 330 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 GABRPO00591 440 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 FRS3O43559 492 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 UBXN7O94888 489 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 RLN1P04808 185 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 HMGN1P05114 100 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 C1SP09871 688 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 NR2C1P13056 603 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 NQO2P16083 231 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 ITGB7P26010 798 aa6.85□□□□□ -1.31
LIMCH1-207ENST00000508466 SELENOWP63302 87 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms