RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 ERMAPQ96PL5 475 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-207ENST00000504761 C19orf25Q9UFG5 118 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-207ENST00000504761 MAN2B2Q9Y2E5 1009 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 SPAG17Q6Q759 2223 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 RAB39AQ14964 217 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 ALG10BQ5I7T1 473 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 DLEU7Q6UYE1 221 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 VRK2Q86Y07 508 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 CROCCP3Q8IVE0 287 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 FAM217AQ8IXS0 508 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 MFSD9Q8NBP5 474 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 OR52R1Q8NGF1 315 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 FANK1Q8TC84 345 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 S100ZQ8WXG8 99 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 OSTF1Q92882 214 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 C1QTNF3Q9BXJ4 246 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 SPNS1Q9H2V7 528 aa13.29□□□□□ -0.28
TCOF1-207ENST00000504761 J3QRK9 145 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 KCNK5O95279 499 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GPR75O95800 540 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 RENP00797 406 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 PKLRP30613 574 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 CHRNEQ04844 493 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 IL18R1Q13478 541 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 SMAD4Q13485 552 aaKnown RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 FAM69BQ5VUD6 431 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 ABHD17CQ6PCB6 329 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 Q6ZPB1 254 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 MCEMP1Q8IX19 187 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 C7orf57Q8NEG2 295 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 OR5T3Q8NGG3 340 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 SLC38A5Q8WUX1 472 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 BORCS5Q969J3 196 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 TMIGD2Q96BF3 282 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 EFHD2Q96C19 240 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GFM1Q96RP9 751 aaKnown RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 LPAR4Q99677 370 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GPR83Q9NYM4 423 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 WDR90Q96KV7 1748 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 FAM227AF5H4B4 570 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 HPRP00739 348 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GABRG2P18507 467 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 EIF1AXP47813 144 aaKnown RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 AFF3P51826 1226 aaKnown RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GPR19Q15760 415 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 SGCBQ16585 318 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 CBLL1Q75N03 491 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 SHFQ7M4L6 423 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 IL22RA1Q8N6P7 574 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GNPDA2Q8TDQ7 276 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 ZFP90Q8TF47 636 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 EZH1Q92800 747 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 CNDP2Q96KP4 475 aaKnown RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 NRTNQ99748 197 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 ITPAQ9BY32 194 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 PITHD1Q9GZP4 211 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GLIPR2Q9H4G4 154 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 SERINC1Q9NRX5 453 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 TDRD15B5MCY1 1934 aaKnown RBP13.28□□□□□ -0.28
TCOF1-207ENST00000504761 SLC1A7O00341 560 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 PEX12O00623 359 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 CPMP14384 443 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 TUBA4AP68366 448 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 IL18Q14116 193 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 ARHGAP22Q7Z5H3 698 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 GPAT4Q86UL3 456 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 KLHL36Q8N4N3 616 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 IKZF5Q9H5V7 419 aa13.28□□□□□ -0.28
TCOF1-207ENST00000504761 PCDH17O14917 1159 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 POLR1CO15160 346 aaPredicted RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 DBIP07108 87 aaKnown RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 ACPPP15309 386 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 RORAP35398 523 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 RACK1P63244 317 aaKnown RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 GAB1Q13480 694 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 OR51L1Q8NGJ5 315 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 OR7D2Q96RA2 312 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 SDHAF3Q9NRP4 125 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 CD300AQ9UGN4 299 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 PLRG1O43660 514 aaKnown RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 CELP19835 753 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 CD27P26842 260 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 DRD3P35462 400 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 DGLUCYQ7Z3D6 616 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 RBM12BQ8IXT5 1001 aaKnown RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 OR2T33Q8NG76 320 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 ADOQ96SZ5 270 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 EPYCQ99645 322 aa13.27□□□□□ -0.28
TCOF1-207ENST00000504761 USP36Q9P275 1121 aaKnown RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 ZFR2Q9UPR6 939 aaKnown RBP13.27□□□□□ -0.28
TCOF1-207ENST00000504761 RIF1Q5UIP0 2472 aaKnown RBP13.27□□□□□ -0.29
TCOF1-207ENST00000504761 IQCMA0A1B0GVH7 501 aa13.27□□□□□ -0.29
TCOF1-207ENST00000504761 GAPDHSO14556 408 aaPredicted RBP13.27□□□□□ -0.29
TCOF1-207ENST00000504761 ZNF24P17028 368 aa13.27□□□□□ -0.29
TCOF1-207ENST00000504761 NUDT1P36639 197 aa13.27□□□□□ -0.29
TCOF1-207ENST00000504761 GNALP38405 381 aa13.27□□□□□ -0.29
TCOF1-207ENST00000504761 PUM1Q14671 1186 aaKnown RBP eCLIP13.27□□□□□ -0.295e-7■■■□□ 16
TCOF1-207ENST00000504761 TMPRSS9Q7Z410 1059 aa13.27□□□□□ -0.29
TCOF1-207ENST00000504761 C19orf47Q8N9M1 422 aaKnown RBP13.27□□□□□ -0.29
TCOF1-207ENST00000504761 C9orf43Q8TAL5 461 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms