RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SSR3Q9UNL2 185 aa15.15■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NCOR1O75376 2440 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 IQCMA0A1B0GVH7 501 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MYL12BO14950 172 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LGI1O95970 557 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RPN2P04844 631 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PCCBP05166 539 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR2B6P58173 313 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TRA2BP62995 288 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ENTPD8Q5MY95 495 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NDUFAF5Q5TEU4 345 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FAM46CQ5VWP2 391 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NXNL2Q5VZ03 156 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PARM1Q6UWI2 310 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMPRSS11AQ6ZMR5 421 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SZRD1Q7Z422 152 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GALNT6Q8NCL4 622 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SETD6Q8TBK2 473 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMCO6Q96DC7 493 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LRR1Q96L50 414 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PLA2G2FQ9BZM2 168 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KLHL31Q9H511 634 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZDHHC4Q9NPG8 344 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLC35C2Q9NQQ7 365 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZCCHC3Q9NUD5 404 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TXNL4BQ9NX01 149 aaKnown RBP15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DPP7Q9UHL4 492 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FBXW2Q9UKT8 454 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PCDHGB2Q9Y5G2 931 aa15.14■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 AP3D1O14617 1153 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RAB36O95755 333 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CLEC2LP0C7M8 214 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DRD2P14416 443 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CPEP16870 476 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GPC1P35052 558 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HTR3AP46098 478 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CLCNKAP51800 687 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CTAG1AP78358 180 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GPR50Q13585 617 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 UAP1L1Q3KQV9 507 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TANGO2Q6ICL3 276 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KIAA1161Q6NSJ0 714 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 USP30Q70CQ3 517 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLC25A46Q96AG3 418 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZNF486Q96H40 463 aaPredicted RBP15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C17orf62Q9BQA9 187 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PLA2G12AQ9BZM1 189 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MIXL1Q9H2W2 232 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DZANK1Q9NVP4 752 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZSCAN32Q9NX65 697 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NPAP1Q9NZP6 1156 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KLHL20Q9Y2M5 609 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TRPM6Q9BX84 2022 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LRIT2A6NDA9 550 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C4orf51C9J302 202 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MAN2B1O00754 1011 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GUCY1B2O75343 617 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CLEC3AO75596 197 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CCNKO75909 580 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CDRT1O95170 752 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRKACBP22694 351 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 BNC1Q01954 994 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DUSP2Q05923 314 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 EIF2B5Q13144 721 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C1DQ13901 141 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NDUFA9Q16795 377 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 WSCD2Q2TBF2 565 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RFPL4BQ6ZWI9 263 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FAM181AQ8N9Y4 354 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 BBS10Q8TAM1 723 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRRC1Q96M27 445 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 YIPF4Q9BSR8 244 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NEK6Q9HC98 313 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CTPS2Q9NRF8 586 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MRPS18AQ9NVS2 196 aaKnown RBP15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 DEC1Q9P2X7 70 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CMAHPQ9Y471 501 aa15.13■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 BDP1A6H8Y1 2624 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 IGLON5A6NGN9 336 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GLOD5A6NK44 160 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 STATHP02808 62 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SERPIND1P05546 499 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 IL9P15248 144 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SSR2P43308 183 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NCBP2P52298 156 aaKnown RBP eCLIP15.12■□□□□ 0.018e-6■■□□□ 13
MSH5-SAPCD1-208ENST00000498473 CHRNEQ04844 493 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MXD1Q05195 221 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MLF2Q15773 248 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZNF750Q32MQ0 723 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GLYR1Q49A26 553 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PIP5KL1Q5T9C9 394 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 KIAA1211LQ6NV74 962 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MEX3DQ86XN8 651 aaKnown RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR6F1Q8NGZ6 308 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TM9SF4Q92544 642 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NELL2Q99435 816 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HDAC8Q9BY41 377 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PLEKHB1Q9UF11 243 aaPredicted RBP15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CD207Q9UJ71 328 aa15.12■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms