RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 GSPT2Q8IYD1 628 aaKnown RBP11.65□□□□□ -0.54
PTPRF-214ENST00000496043 CCDC63Q8NA47 563 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 RDH11Q8TC12 318 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 KAT2AQ92830 837 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 C11orf24Q96F05 449 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-214ENST00000496043 BBS4Q96RK4 519 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 NODALQ96S42 347 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 SHCBP1LQ9BZQ2 653 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 UBQLN3Q9H347 655 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 EHD3Q9NZN3 535 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 EXO1Q9UQ84 846 aaKnown RBP11.65□□□□□ -0.54
PTPRF-214ENST00000496043 WBP11Q9Y2W2 641 aaKnown RBP11.65□□□□□ -0.54
PTPRF-214ENST00000496043 SLC6A5Q9Y345 797 aa11.65□□□□□ -0.54
PTPRF-214ENST00000496043 CACNA1CQ13936 2221 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 C2orf72A6NCS6 295 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 OR6C70A6NIJ9 312 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 COPEO14579 308 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 PLOD3O60568 738 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 PLIN3O60664 434 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 ABCB7O75027 752 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 UGT2B11O75310 529 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 BMP7P18075 431 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 DDCP20711 480 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 PTPN6P29350 595 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 GCKP35557 465 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 KRT20P35900 424 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 SLCO1A2P46721 670 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 FOXA1P55317 472 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 KRTAP10-9P60411 292 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 PSPHP78330 225 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 CRYZQ08257 329 aaKnown RBP11.64□□□□□ -0.55
PTPRF-214ENST00000496043 CEBPEQ15744 281 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 EIPR1Q53HC9 387 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 NHSL2Q5HYW2 709 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 WIPI1Q5MNZ9 446 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-214ENST00000496043 DESI1Q6ICB0 168 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 FRMD7Q6ZUT3 714 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 TRIM46Q7Z4K8 759 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 FAM9CQ8IZT9 166 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 OR9A2Q8NGT5 310 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 FAM76AQ8TAV0 307 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.64□□□□□ -0.553e-10■■■■■ 88.3
PTPRF-214ENST00000496043 ABTB1Q969K4 478 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-214ENST00000496043 TMBIM1Q969X1 311 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 COL21A1Q96P44 957 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 ZNF559Q9BR84 538 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 OSBPL11Q9BXB4 747 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 EBPLQ9BY08 206 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 STMN4Q9H169 189 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-214ENST00000496043 RRAGDQ9NQL2 400 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-214ENST00000496043 OXSMQ9NWU1 459 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 TAS2R9Q9NYW1 312 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 KLRF1Q9NZS2 232 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 KCNN3Q9UGI6 736 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 ITGB1BP2Q9UKP3 347 aa11.64□□□□□ -0.55
PTPRF-214ENST00000496043 PHF3Q92576 2039 aaKnown RBP11.64□□□□□ -0.55
PTPRF-214ENST00000496043 ABCA12Q86UK0 2595 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 PRAMEF25A6NGN4 478 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 SMIM23A6NLE4 172 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 MYO1GB0I1T2 1018 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 SYT5O00445 386 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 SNPHO15079 494 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 ERN1O75460 977 aaKnown RBP11.63□□□□□ -0.55
PTPRF-214ENST00000496043 ACTL6AO96019 429 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 IL2RAP01589 272 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 UROSP10746 265 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 KRT4P19013 534 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 CEACAM8P31997 349 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-214ENST00000496043 TIMP3P35625 211 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 PTGDSP41222 190 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 ZNF763Q0D2J5 394 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 EFR3AQ14156 821 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 SEM1Q6ZVN7 128 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 WDR53Q7Z5U6 358 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-214ENST00000496043 YRDCQ86U90 279 aaKnown RBP11.63□□□□□ -0.55
PTPRF-214ENST00000496043 LACC1Q8IV20 430 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 LRRN4CLQ8ND94 238 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 FAM83FQ8NEG4 500 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-214ENST00000496043 CDC26Q8NHZ8 85 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 DTNBP1Q96EV8 351 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 LRRC46Q96FV0 321 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 WDYHV1Q96HA8 205 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 BTBD9Q96Q07 612 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 ADOQ96SZ5 270 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 UGT2B28Q9BY64 529 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 PRDM14Q9GZV8 571 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 ANKRA2Q9H9E1 313 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 TAS2R7Q9NYW3 318 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 SENP1Q9P0U3 644 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 CAMK2AQ9UQM7 478 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 APCP25054 2843 aa11.63□□□□□ -0.55
PTPRF-214ENST00000496043 TLDC2A0PJX2 215 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 SLC28A1O00337 649 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 DVL2O14641 736 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 TSPAN2O60636 221 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 SEC22BO75396 215 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 RSL1D1O76021 490 aaKnown RBP11.62□□□□□ -0.55
PTPRF-214ENST00000496043 CT45A8P0DMV1 189 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 CT45A9P0DMV2 189 aa11.62□□□□□ -0.55
PTPRF-214ENST00000496043 PEX19P40855 299 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms