RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 BRINP2Q9C0B6 783 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 HEY2Q9UBP5 337 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 BCAP29Q9UHQ4 241 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 FBXL2Q9UKC9 423 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 SNX12Q9UMY4 172 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 CFL2Q9Y281 166 aa12.63□□□□□ -0.39
VARS-227ENST00000489979 RNF212BA8MTL3 300 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 C16orf97H3BN30 126 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 ACOX3O15254 700 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 PORP16435 677 aaPredicted RBP12.62□□□□□ -0.39
VARS-227ENST00000489979 SSTR1P30872 391 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 KIR2DL2P43627 348 aaPredicted RBP12.62□□□□□ -0.39
VARS-227ENST00000489979 KCNJ5P48544 419 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 PIK3CGP48736 1102 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 SIRPAP78324 504 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 HMGCS1Q01581 520 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 DR1Q01658 176 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 KRTAP1-1Q07627 177 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 MGAT2Q10469 447 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 PRICKLE4Q2TBC4 344 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 OR2A2Q6IF42 318 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 C22orf34Q6ZV56 151 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 RAPH1Q70E73 1250 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 CMC1Q7Z7K0 106 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 WDR20Q8TBZ3 569 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 IGFBPL1Q8WX77 278 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 SLC39A3Q9BRY0 314 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 NMRAL1Q9HBL8 299 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 PSD3Q9NYI0 1048 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 ELOVL5Q9NYP7 299 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 DKKL1Q9UK85 242 aa12.62□□□□□ -0.39
VARS-227ENST00000489979 LRRC14BA6NHZ5 514 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 SLC22A20A6NK97 555 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 FOXE1O00358 373 aaPredicted RBP12.61□□□□□ -0.39
VARS-227ENST00000489979 KLK1P06870 262 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 MTHFD2P13995 350 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 PAX1P15863 534 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 GP5P40197 560 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 NR1H2P55055 460 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 MAP4K2Q12851 820 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 TNK1Q13470 666 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 CAPRIN1Q14444 709 aaKnown RBP12.61□□□□□ -0.39
VARS-227ENST00000489979 ANKRD34AQ69YU3 496 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 OR5M10Q6IEU7 315 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 CHMP1BQ7LBR1 199 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 MEIOBQ8N635 442 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 ADCY4Q8NFM4 1077 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 PYROXD1Q8WU10 500 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 TMEM171Q8WVE6 324 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 FIG4Q92562 907 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 TMCO6Q96DC7 493 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 ZNF845Q96IR2 970 aaPredicted RBP12.61□□□□□ -0.39
VARS-227ENST00000489979 MAT2BQ9NZL9 334 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 PLLPQ9Y342 182 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 RNF11Q9Y3C5 154 aa12.61□□□□□ -0.39
VARS-227ENST00000489979 ABCA1O95477 2261 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 ZIC3O60481 467 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 UGDHO60701 494 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 SEMA3DO95025 777 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 CBX7O95931 251 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 CGAP01215 116 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 LTA4HP09960 611 aaKnown RBP12.6□□□□□ -0.39
VARS-227ENST00000489979 FEN1P39748 380 aaKnown RBP12.6□□□□□ -0.39
VARS-227ENST00000489979 ATP5J2P56134 94 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 GPX6P59796 221 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 BCL2A1Q16548 175 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 PFKFB4Q16877 469 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 HMBOX1Q6NT76 420 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 TBC1D1Q86TI0 1168 aaPredicted RBP12.6□□□□□ -0.39
VARS-227ENST00000489979 PHC2Q8IXK0 858 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 UBQLNLQ8IYU4 475 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 ZNF610Q8N9Z0 462 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 L3MBTL4Q8NA19 623 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 MAPK1IP1LQ8NDC0 245 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 OR52R1Q8NGF1 315 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 TMBIM1Q969X1 311 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 NXNL1Q96CM4 212 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 COL21A1Q96P44 957 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 SERPINI1Q99574 410 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 KLHL4Q9C0H6 718 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 CXorf56Q9H5V9 222 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 ZNF701Q9NV72 531 aaPredicted RBP12.6□□□□□ -0.39
VARS-227ENST00000489979 ZNF639Q9UID6 485 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 CES1P1Q9UKY3 287 aa12.6□□□□□ -0.39
VARS-227ENST00000489979 MRPS18CQ9Y3D5 142 aaKnown RBP12.6□□□□□ -0.39
VARS-227ENST00000489979 PRR14LQ5THK1 2151 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.59□□□□□ -0.39
VARS-227ENST00000489979 TCRBV9S1A1TA0A576 114 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 FRG2CA6NGY1 282 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 OR6C70A6NIJ9 312 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 FAM159BA6NKW6 160 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 SYCE1LA8MT33 242 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 EFCAB8A8MWE9 144 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 B4DXG7 233 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 TO15178 435 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 EMC8O43402 210 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 ERAL1O75616 437 aaKnown RBP12.59□□□□□ -0.39
VARS-227ENST00000489979 REM1O75628 298 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 PEPDP12955 493 aa12.59□□□□□ -0.39
VARS-227ENST00000489979 GFAPP14136 432 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms