RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CUEDC1Q9NWM3 386 aaPredicted RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 PRODH2Q9UF12 536 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TP53I11O14683 189 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 PRKACBP22694 351 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 ACSL1P33121 698 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 SHC2P98077 582 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 ACY1Q03154 408 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TCTE1Q5JU00 501 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 GATSQ8NAP1 163 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 ADAMTS16Q8TE57 1224 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 DAZLQ92904 295 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 TXNDC15Q96J42 360 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 MAELQ96JY0 434 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 SNX18Q96RF0 628 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 BARD1Q99728 777 aaKnown RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 OBP2AQ9NY56 170 aa10.45□□□□□ -0.74
HDAC6-228ENST00000486227 NFKBIL1Q9UBC1 381 aaPredicted RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 DNMT3AQ9Y6K1 912 aaPredicted RBP10.45□□□□□ -0.74
HDAC6-228ENST00000486227 AKAP8O43823 692 aaKnown RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 HBQ1P09105 142 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 RHCEP18577 417 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CERS1P27544 350 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 KCNJ5P48544 419 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 PER3P56645 1201 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 MCCD1P59942 119 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 HNRNPA0Q13151 305 aaKnown RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CAMK1Q14012 370 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ELOAQ14241 798 aaKnown RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 SELPLGQ14242 412 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ARHGAP19Q14CB8 494 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF77Q15935 545 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 DUSP6Q16828 381 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 FIGNL1Q6PIW4 674 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 OR52P1PQ8NH57 321 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 DPAGT1Q9H3H5 408 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CLMPQ9H6B4 373 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 BTNL2Q9UIR0 455 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 USP22Q9UPT9 525 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF726A6NNF4 738 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF195O14628 629 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF823P16415 610 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CTBSQ01459 385 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 IDNKQ5T6J7 187 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 TTLL10Q6ZVT0 673 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 TMEFF1Q8IYR6 380 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 KLHL36Q8N4N3 616 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 DUS3LQ96G46 650 aaKnown RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 UHRF1Q96T88 793 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 PELOQ9BRX2 385 aaKnown RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 DUSP23Q9BVJ7 150 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 PBX4Q9BYU1 374 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 PCDHGB5Q9Y5G0 923 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CLDN24A6NM45 220 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 GABARAPO95166 117 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 APOL3O95236 402 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF3P17036 446 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CA5AP35218 305 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CCR2P41597 374 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF691Q5VV52 312 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ASB18Q6ZVZ8 466 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 VWA5B2Q8N398 1253 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 TSEN15Q8WW01 171 aaKnown RBP10.44□□□□□ -0.74
HDAC6-228ENST00000486227 NAT6Q93015 286 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 CTRCQ99895 268 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 ZFYVE21Q9BQ24 234 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 P2RY12Q9H244 342 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 TUBB1Q9H4B7 451 aa10.44□□□□□ -0.74
HDAC6-228ENST00000486227 TMX2-CTNND1H3BSU7 103 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 GFRA2O00451 464 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 SULT1C4O75897 302 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 ITGAMP11215 1152 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 MAZP56270 477 aaKnown RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 TAP2Q03519 686 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 HSF5Q4G112 596 aaPredicted RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 RPS26P11Q5JNZ5 115 aaPredicted RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 GARNL3Q5VVW2 1013 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF765Q7L2R6 523 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 ATCAYQ86WG3 371 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 MARCH9Q86YJ5 346 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 FUNDC1Q8IVP5 155 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 ZNF740Q8NDX6 193 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 RNASE11Q8TAA1 199 aaKnown RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 EPYCQ99645 322 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 WACQ9BTA9 647 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 SLC6A16Q9GZN6 736 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 DCAF13Q9NV06 445 aaKnown RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 NLGN3Q9NZ94 848 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 MAGED1Q9Y5V3 778 aaPredicted RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 QSER1Q2KHR3 1735 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 HMX3A6NHT5 357 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 BLOC1S5-TXNDC5H3BN57 136 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 FAAHO00519 579 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 BCAT2O15382 392 aaPredicted RBP10.43□□□□□ -0.74
HDAC6-228ENST00000486227 TAPBPO15533 448 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 KLHL18O94889 574 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 HLA-DPB1P04440 258 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 PPP3R1P63098 170 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 PITPNAQ00169 270 aa10.43□□□□□ -0.74
HDAC6-228ENST00000486227 DEFB133Q30KQ1 61 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms