RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PCDHGB4Q9UN71 923 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 SCN2AQ99250 2005 aa15.82■□□□□ 0.12
VIM-205ENST00000485947 PRRC2CQ9Y520 2896 aaKnown RBP15.81■□□□□ 0.12
VIM-205ENST00000485947 A0A1W2PRB8 838 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 DNAJB6O75190 326 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 ZCCHC18P0CG32 403 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 NTSP30990 170 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 BTG2P78543 158 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 BIKQ13323 160 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 MLC1Q15049 377 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 MPEG1Q2M385 716 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 SPATS1Q496A3 300 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 SHISA5Q8N114 240 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 NFAM1Q8NET5 270 aaPredicted RBP15.81■□□□□ 0.12
VIM-205ENST00000485947 OR8J3Q8NGG0 315 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 GOT1L1Q8NHS2 421 aaPredicted RBP15.81■□□□□ 0.12
VIM-205ENST00000485947 NR4A3Q92570 626 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 C5orf34Q96MH7 638 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 PANX1Q96RD7 426 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 CGREF1Q99674 301 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 THTPAQ9BU02 230 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 RPF2Q9H7B2 306 aaKnown RBP15.81■□□□□ 0.12
VIM-205ENST00000485947 TRIM45Q9H8W5 580 aaPredicted RBP15.81■□□□□ 0.12
VIM-205ENST00000485947 NEUROD4Q9HD90 331 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 SLC35C2Q9NQQ7 365 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 PRTFDC1Q9NRG1 225 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 RYDENQ9NUL5 291 aaKnown RBP15.81■□□□□ 0.12
VIM-205ENST00000485947 ABCD2Q9UBJ2 740 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 ENTPD4Q9Y227 616 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 AP3M1Q9Y2T2 418 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 ABCA12Q86UK0 2595 aa15.81■□□□□ 0.12
VIM-205ENST00000485947 TRBV5-3A0A0A0MS03 114 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 CYR61O00622 381 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 CTNSO60931 367 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 SEMA7AO75326 666 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 ANP32DO95626 131 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 CD46P15529 392 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 HOXB9P17482 250 aaPredicted RBP15.8■□□□□ 0.12
VIM-205ENST00000485947 MAOAP21397 527 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 PPP2R1BP30154 601 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 PER3P56645 1201 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 KCNJ2P63252 427 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 TUBA3CQ13748 450 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 CEBPEQ15744 281 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 ZNF766Q5HY98 468 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 TUBA3EQ6PEY2 450 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 ANKRD46Q86W74 232 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 BEST3Q8N1M1 668 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 TMEM178AQ8NBL3 297 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 B3GNT7Q8NFL0 401 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 OR5P2Q8WZ92 322 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 TANKQ92844 425 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 EXOSC8Q96B26 276 aaKnown RBP15.8■□□□□ 0.12
VIM-205ENST00000485947 ANKRD27Q96NW4 1050 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 PHF12Q96QT6 1004 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 SH3GL1Q99961 368 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 IL1RL2Q9HB29 575 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 ADAP2Q9NPF8 381 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 TMEM181Q9P2C4 612 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 CPAMD8Q8IZJ3 1885 aa15.8■□□□□ 0.12
VIM-205ENST00000485947 HIVEP3Q5T1R4 2406 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 A0A1B0GUH1 482 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 MYO1GB0I1T2 1018 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 ANKRD65E5RJM6 399 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 FAM227AF5H4B4 570 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 PGRMC2O15173 223 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CPSF4O95639 269 aaKnown RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 STSP08842 583 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CSNK2A2P19784 350 aaPredicted RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 PPIBP23284 216 aaKnown RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 SLC6A2P23975 617 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 TRHRP34981 398 aaPredicted RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 CD96P40200 585 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CLCN2P51788 898 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 SLC13A2Q13183 592 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 SERTAD2Q14140 314 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 PRSS53Q2L4Q9 553 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CLECL1Q8IZS7 167 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 TRIML2Q8N7C3 387 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 FAM98AQ8NCA5 519 aaKnown RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 MDS2Q8NDY4 140 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 OR4A15Q8NGL6 344 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CIDECQ96AQ7 238 aaPredicted RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 SCMH1Q96GD3 660 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 TAAR6Q96RI8 345 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 BBS4Q96RK4 519 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CDRT15Q96T59 188 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 CSF3RQ99062 836 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 INPP5KQ9BT40 448 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 DEFB126Q9BYW3 111 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 NECTIN3Q9NQS3 549 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 TAS2R9Q9NYW1 312 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 SLAMF8Q9P0V8 285 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.79■□□□□ 0.12
VIM-205ENST00000485947 PCDHB14Q9Y5E9 798 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 GMEB1Q9Y692 573 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 ZNF780BQ9Y6R6 833 aa15.79■□□□□ 0.12
VIM-205ENST00000485947 DNAJA2O60884 412 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 PRKRAO75569 313 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 ERAL1O75616 437 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms