RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 KIAA0754O94854 1291 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF432O94892 652 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 IGSF6O95976 241 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 SP1P08047 785 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CD1DP15813 335 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 ATP6V1C1P21283 382 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 PSMA2P25787 234 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 SAA4P35542 130 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CHI3L1P36222 383 aaPredicted RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 TMEM50BP56557 158 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 PEX3P56589 373 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 NOP14P78316 857 aaKnown RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 IL9RQ01113 521 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CNTN2Q02246 1040 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 HNRNPA0Q13151 305 aaKnown RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 RIPK1Q13546 671 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 TFDP1Q14186 410 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CD226Q15762 336 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CCDC57Q2TAC2 916 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 TMEM30BQ3MIR4 351 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 AGAP7PQ5VUJ5 663 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 BSPRYQ5W0U4 402 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 NUFIP2Q7Z417 695 aaKnown RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 KCNMB4Q86W47 210 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 KLHDC8BQ8IXV7 354 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CENPSQ8N2Z9 138 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 OR52B6Q8NGF0 335 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 SPRYD4Q8WW59 207 aaPredicted RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 LHX4Q969G2 390 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 ATXN7L3BQ96GX2 97 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 DUX3Q96PT4 197 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 LGMNQ99538 433 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 APOOQ9BUR5 198 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 ZNF696Q9H7X3 374 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 DEPPQ9NTK1 212 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 CACNG5Q9UF02 275 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 HPCAL4Q9UM19 191 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 EIF3LQ9Y262 564 aaKnown RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 SLC9A8Q9Y2E8 581 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 MRPS28Q9Y2Q9 187 aaKnown RBP4.28□□□□□ -1.72
UPF3B-203ENST00000478840 PTCH1Q13635 1447 aa4.28□□□□□ -1.72
UPF3B-203ENST00000478840 KIF16BQ96L93 1317 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 IGHV4-30-2A0A087WSY4 118 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 PPIAL4CA0A0B4J2A2 164 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 MEX3AA1L020 520 aaKnown RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ASB14A6NK59 587 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ARHGEF33A8MVX0 844 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 K7EQG2 157 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 GPRIN2O60269 458 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 SNX4O95219 450 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ANP32DO95626 131 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 MT-ND1P03886 318 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ZSCAN5DPP0CG00 497 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 PPIAL4GP0DN37 164 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 UCP1P25874 307 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 PPT1P50897 306 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 VCPP55072 806 aaKnown RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 UBE2HP62256 183 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 SELPLGQ14242 412 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 MAJINQ3KP22 176 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 MOGAT2Q3SYC2 334 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 MUC21Q5SSG8 566 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 LINC00242Q5T6M2 205 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 TAF3Q5VWG9 929 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 GDPGP1Q6ZNW5 385 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 Q7L0L9 218 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 LUZP1Q86V48 1076 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ZNF679Q8IYX0 411 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ZNF614Q8N883 585 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 OR1B1Q8NGR6 318 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 RAET1EQ8TD07 263 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 BIRC7Q96CA5 298 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 FBXO17Q96EF6 278 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 RBM4Q9BWF3 364 aaKnown RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 TRIM6Q9C030 488 aaPredicted RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 DCAF16Q9NXF7 216 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 BARHL2Q9NY43 387 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 EIF3KQ9UBQ5 218 aaKnown RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ZNF346Q9UL40 294 aaKnown RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 EXOGQ9Y2C4 368 aaKnown RBP4.27□□□□□ -1.73
UPF3B-203ENST00000478840 ASB3Q9Y575 518 aa4.27□□□□□ -1.73
UPF3B-203ENST00000478840 A0A0J9YVX5 310 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 PRSS44E7EML9 344 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 TM9SF1O15321 606 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 RANBP6O60518 1105 aaKnown RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 SNAP91O60641 907 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 BCAS1O75363 584 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 MTX2O75431 263 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 ADCY5O95622 1261 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 OPN1LWP04000 364 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 HOXB7P09629 217 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 GSTT2P0CG29 244 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 GSTT2BP0CG30 244 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 ADORA3P0DMS8 318 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 NT5EP21589 574 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 RGS4P49798 205 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 SRPXP78539 464 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 HMGN5P82970 282 aaKnown RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 CBX1P83916 185 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 FKBP3Q00688 224 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms