RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 STK38LQ9Y2H1 464 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 PTGDR2Q9Y5Y4 395 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 ZNF780BQ9Y6R6 833 aa12.89□□□□□ -0.35
UPF3A-204ENST00000475218 GNG14A0A1W2PPG7 69 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 SMIM23A6NLE4 172 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 SLC18A2Q05940 514 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 EIPR1Q53HC9 387 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 C6orf163Q5TEZ5 329 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 TMEM198Q66K66 360 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 TIGD3Q6B0B8 471 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 POMZP3Q6PJE2 187 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 DMRTC2Q8IXT2 367 aaPredicted RBP12.88□□□□□ -0.35
UPF3A-204ENST00000475218 RNF138Q8WVD3 245 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 HSPBAP1Q96EW2 488 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 EXO5Q9H790 373 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 OXSMQ9NWU1 459 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 SLC6A5Q9Y345 797 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 PCDHGB3Q9Y5G1 929 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 CCDC168Q8NDH2 2452 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 HIVEP1P15822 2718 aa12.88□□□□□ -0.35
UPF3A-204ENST00000475218 FRG2CA6NGY1 282 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ENO4A6NNW6 628 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 GNB5O14775 395 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ACOX3O15254 700 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ICOSLGO75144 302 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ANXA4P09525 319 aaPredicted RBP12.87□□□□□ -0.35
UPF3A-204ENST00000475218 SSTR2P30874 369 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 PLCXD2Q0VAA5 305 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 KIAA0040Q15053 153 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ACSF3Q4G176 576 aaPredicted RBP12.87□□□□□ -0.35
UPF3A-204ENST00000475218 FAM71E1Q6IPT2 247 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 NUP54Q7Z3B4 507 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 WDSUB1Q8N9V3 476 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 OR2W6PQ8NHA6 318 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 TMBIM1Q969X1 311 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 CCDC126Q96EE4 140 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 SHCBP1LQ9BZQ2 653 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 KCNJ16Q9NPI9 418 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ALKBH4Q9NXW9 302 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 B4GALT7Q9UBV7 327 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 CFL2Q9Y281 166 aa12.87□□□□□ -0.35
UPF3A-204ENST00000475218 ANKRD17O75179 2603 aaKnown RBP12.87□□□□□ -0.35
UPF3A-204ENST00000475218 C17orf51A8MQB3 221 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 MYO1GB0I1T2 1018 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TSPAN2O60636 221 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 HOXD4P09016 255 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 CPA3P15088 417 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 KRT4P19013 534 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TACR1P25103 407 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 ZFP36L2P47974 494 aaKnown RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 PCLAFQ15004 111 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 CCDC153Q494R4 210 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 NHSL2Q5HYW2 709 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 WIPI1Q5MNZ9 446 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 RIPPLY2Q5TAB7 128 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 CLEC6AQ6EIG7 209 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 VASNQ6EMK4 673 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 ANGPTL8Q6UXH0 198 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 PACS2Q86VP3 889 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 C4orf33Q8N1A6 199 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 OR4N2Q8NGD1 307 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 OR10Q1Q8NGQ4 319 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 UGT2B28Q9BY64 529 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 PRDM14Q9GZV8 571 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 PRODH2Q9UF12 536 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 GRID1Q9ULK0 1009 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 C15orf38-AP3S2A0A0A6YYH1 394 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 SNPHO15079 494 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 PLOD3O60568 738 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TRAPPC6AO75865 159 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 GABRA1P14867 456 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 BMP7P18075 431 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 KRT15P19012 456 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 POU3F2P20265 443 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 DDCP20711 480 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 DCAF7P61962 342 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TLE4Q04727 773 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 ZNF763Q0D2J5 394 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 HEPACAMQ14CZ8 416 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 SPDYAQ5MJ70 313 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 C10orf107Q8IVU9 208 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 RELL2Q8NC24 303 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 FAM83FQ8NEG4 500 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TNIP2Q8NFZ5 429 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 OR2T11Q8NH01 316 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 RDH11Q8TC12 318 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 ERP27Q96DN0 273 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 SLC35A4Q96G79 324 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 WDYHV1Q96HA8 205 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 EGLN2Q96KS0 407 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 OSBPL11Q9BXB4 747 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TUBB1Q9H4B7 451 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 METTL7AQ9H8H3 244 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 FOLH1BQ9HBA9 442 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 MCCC2Q9HCC0 563 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 MYNNQ9NPC7 610 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 TAS2R7Q9NYW3 318 aa12.86□□□□□ -0.35
UPF3A-204ENST00000475218 POLR3HQ9Y535 204 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-204ENST00000475218 OR6C70A6NIJ9 312 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 PSMG1O95456 288 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms