RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	SLC1A6	P48664	564 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	NR0B1	P51843	470 aa	Known RBP	13.91	□□□□□ -0.18
VARS-223	ENST00000474643	MYBPH	Q13203	477 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	EBP	Q15125	230 aa	Known RBP	13.91	□□□□□ -0.18
VARS-223	ENST00000474643	RPS6KA2	Q15349	733 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	ZNF791	Q3KP31	576 aa	Predicted RBP	13.91	□□□□□ -0.18
VARS-223	ENST00000474643	TBCEL	Q5QJ74	424 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	GALNT18	Q6P9A2	607 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	DGAT2L6	Q6ZPD8	337 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	TMEM200A	Q86VY9	491 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	MARVELD2	Q8N4S9	558 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	LILRB4	Q8NHJ6	448 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	PAQR8	Q8TEZ7	354 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	EXOSC8	Q96B26	276 aa	Known RBP	13.91	□□□□□ -0.18
VARS-223	ENST00000474643	UCK2	Q9BZX2	261 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	TUBB1	Q9H4B7	451 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	SLC24A3	Q9HC58	644 aa		13.91	□□□□□ -0.18
VARS-223	ENST00000474643	INTS9	Q9NV88	658 aa	Known RBP	13.91	□□□□□ -0.18
VARS-223	ENST00000474643	CACNA1C	Q13936	2221 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	C15orf38-AP3S2	A0A0A6YYH1	394 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643		A0A1W2PS29	197 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	ITM2A	O43736	263 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	HCN1	O60741	890 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	ZNF354A	O60765	605 aa	Predicted RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	TRAPPC6A	O75865	159 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	CELA3A	P09093	270 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	FBXO45	P0C2W1	286 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	GABRA1	P14867	456 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	CAPN3	P20807	821 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	SSTR4	P31391	388 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	GALNS	P34059	522 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	GCK	P35557	465 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	TRPC1	P48995	793 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	SLC37A1	P57057	533 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	ATP6AP1L	Q52LC2	224 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	C1orf185	Q5T7R7	199 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	ATG16L1	Q676U5	607 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	FAM180B	Q6P0A1	224 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	WDR53	Q7Z5U6	358 aa	Predicted RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	CDH24	Q86UP0	819 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	PACS2	Q86VP3	889 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	SAMD14	Q8IZD0	417 aa	Predicted RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	LRRC25	Q8N386	305 aa	Predicted RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	RPRML	Q8N4K4	120 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	OR2T11	Q8NH01	316 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	C14orf79	Q96F83	325 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	LRRC46	Q96FV0	321 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	METTL2A	Q96IZ6	378 aa	Known RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	PPP3R2	Q96LZ3	170 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	BBS4	Q96RK4	519 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	ZNF559	Q9BR84	538 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	ZNF703	Q9H7S9	590 aa	Predicted RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	MCCC2	Q9HCC0	563 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	SIRT5	Q9NXA8	310 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	HEY2	Q9UBP5	337 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	BCAP29	Q9UHQ4	241 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	CFL2	Q9Y281	166 aa		13.9	□□□□□ -0.18
VARS-223	ENST00000474643	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	13.9	□□□□□ -0.18
VARS-223	ENST00000474643	PEX11A	O75192	247 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	HOXD4	P09016	255 aa	Predicted RBP	13.89	□□□□□ -0.19
VARS-223	ENST00000474643	PRPH2	P23942	346 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	MAPK1	P28482	360 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	ARRB2	P32121	409 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	ZFP36L2	P47974	494 aa	Known RBP	13.89	□□□□□ -0.19
VARS-223	ENST00000474643	FOXO1	Q12778	655 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	PDCD2	Q16342	344 aa	Predicted RBP	13.89	□□□□□ -0.19
VARS-223	ENST00000474643	NTRK2	Q16620	822 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	HYAL4	Q2M3T9	481 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	EMC4	Q5J8M3	183 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	RNF165	Q6ZSG1	346 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643		Q6ZSR9	355 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	VWA5B2	Q8N398	1253 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	ZNF781	Q8N8C0	355 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	TUBGCP3	Q96CW5	907 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	PPP1R36	Q96LQ0	422 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	CCT7	Q99832	543 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	TTYH2	Q9BSA4	534 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	OR10A5	Q9H207	317 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	METTL7A	Q9H8H3	244 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	ZNF395	Q9H8N7	513 aa	Predicted RBP	13.89	□□□□□ -0.19
VARS-223	ENST00000474643	CXorf21	Q9HAI6	301 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	MYNN	Q9NPC7	610 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	CES1P1	Q9UKY3	287 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	WBP11	Q9Y2W2	641 aa	Known RBP	13.89	□□□□□ -0.19
VARS-223	ENST00000474643	TMED5	Q9Y3A6	229 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	RAP2C	Q9Y3L5	183 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	CCL27	Q9Y4X3	112 aa		13.89	□□□□□ -0.19
VARS-223	ENST00000474643	CSMD2	Q7Z408	3487 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	ADGRG4	Q8IZF6	3080 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	LSM1	O15116	133 aa	Known RBP	13.88	□□□□□ -0.19
VARS-223	ENST00000474643	NADK	O95544	446 aa	Predicted RBP	13.88	□□□□□ -0.19
VARS-223	ENST00000474643	DDC	P20711	480 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	NTS	P30990	170 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	RPL14	P50914	215 aa	Known RBP	13.88	□□□□□ -0.19
VARS-223	ENST00000474643	BST1	Q10588	318 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	UGT3A2	Q3SY77	523 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	CES4A	Q5XG92	561 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	TMEM64	Q6YI46	380 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	IKBIP	Q70UQ0	350 aa		13.88	□□□□□ -0.19
VARS-223	ENST00000474643	CCDC116	Q8IYX3	515 aa		13.88	□□□□□ -0.19

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