RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ENO1P06733 434 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 RHOXF2BP0C7M4 288 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 PYGBP11216 843 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 BMP5P22003 454 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 HMOX2P30519 316 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 TIMP3P35625 211 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 PPICP45877 212 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 NAGLUP54802 743 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 PKNOX1P55347 436 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 DCAF7P61962 342 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 SNTA1Q13424 505 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 SNTB1Q13884 538 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 SLC29A2Q14542 456 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 TOMM20Q15388 145 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 SPIN4Q56A73 249 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 CES4AQ5XG92 561 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 NSUN5P2Q63ZY6 315 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 ARSKQ6UWY0 536 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 NUP54Q7Z3B4 507 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 SLC22A9Q8IVM8 553 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 IFT20Q8IY31 132 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 PM20D2Q8IYS1 436 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 OR1J4Q8NGS1 313 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 OR9A2Q8NGT5 310 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 ACMSDQ8TDX5 336 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 PSMC3IPQ9P2W1 217 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 PRODH2Q9UF12 536 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 CAMK2AQ9UQM7 478 aa17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 GPR55Q9Y2T6 319 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-206ENST00000473405 GNG14A0A1W2PPG7 69 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 C2orf72A6NCS6 295 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 PRAMEF25A6NGN4 478 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 UBFD1O14562 309 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 NME6O75414 186 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 ESRRBO95718 433 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 GSTA1P08263 222 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 DRD2P14416 443 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 TIA1P31483 386 aaKnown RBP eCLIP17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 ZNF136P52737 540 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 CORO7P57737 925 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 SLC30A6Q6NXT4 461 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 GALNT18Q6P9A2 607 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 CCDC116Q8IYX3 515 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 WDSUB1Q8N9V3 476 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 C16orf78Q8WTQ4 265 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 NRGNQ92686 78 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 KAT2AQ92830 837 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 TMBIM1Q969X1 311 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 EXOSC8Q96B26 276 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 ERP27Q96DN0 273 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 WDYHV1Q96HA8 205 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 EBPLQ9BY08 206 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 KLRF1Q9NZS2 232 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 STK38LQ9Y2H1 464 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 TIMM22Q9Y584 194 aa17.13■□□□□ 0.33
CCDC88B-206ENST00000473405 OR6C70A6NIJ9 312 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 G3V2L1 256 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 KIF2AO00139 706 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 DVL2O14641 736 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 ZWINTO95229 277 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 CT45A8P0DMV1 189 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 CT45A9P0DMV2 189 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 ASCL1P50553 236 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 FOXA1P55317 472 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 ACSM2AQ08AH3 577 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 CEBPEQ15744 281 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 FBXL19-AS1Q494R0 122 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 CT45A2Q5DJT8 189 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 ACSM2BQ68CK6 577 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 NPSR1Q6W5P4 371 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 YRDCQ86U90 279 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 GSPT2Q8IYD1 628 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 ZZZ3Q8IYH5 903 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 CEP112Q8N8E3 955 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 KIF18AQ8NI77 898 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 ABTB1Q969K4 478 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 VSTM2LQ96N03 204 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 RHOXF2Q9BQY4 288 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 SERHLQ9NQF3 203 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 PFDN4Q9NQP4 134 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 TBK1Q9UHD2 729 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 MAPRE3Q9UPY8 281 aa17.12■□□□□ 0.33
CCDC88B-206ENST00000473405 MED12LQ86YW9 2145 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 SERTM1A2A2V5 107 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 MBD3L4A6NDZ8 208 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 MBD3L3A6NE82 208 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 MBD3L5A6NJ08 208 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 CD8B2A6NJW9 211 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 SYT5O00445 386 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 UQCRC1P31930 480 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 HEPACAMQ14CZ8 416 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 SCIMPQ6UWF3 145 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 MBD3L2Q8NHZ7 208 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 RNF138Q8WVD3 245 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 SLC35A4Q96G79 324 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 COL21A1Q96P44 957 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 OR2B2Q9GZK3 357 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 SLC35C2Q9NQQ7 365 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 SIRT5Q9NXA8 310 aa17.11■□□□□ 0.33
CCDC88B-206ENST00000473405 CRIM1Q9NZV1 1036 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms