RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	LRIT2	A6NDA9	550 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZNF840P	A6NDX5	716 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZNF487	B1APH4	448 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	GPRIN2	O60269	458 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	RANBP6	O60518	1105 aa	Known RBP	2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	IGSF6	O95976	241 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	SLC35G4	P0C7Q5	338 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	CYP11B1	P15538	503 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	FUT1	P19526	365 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	HSPA1L	P34931	641 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	SLC26A5	P58743	744 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	IL9R	Q01113	521 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	BNIP1	Q12981	228 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	SPP2	Q13103	211 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ABRAXAS2	Q15018	415 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	SLC1A5	Q15758	541 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	INA	Q16352	499 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	C15orf32	Q32M92	178 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	IRGC	Q6NXR0	463 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	CCBE1	Q6UXH8	406 aa	Predicted RBP	2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ADAMTSL5	Q6ZMM2	481 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZNF600	Q6ZNG1	722 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	NET1	Q7Z628	596 aa	Predicted RBP	2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	CEACAM19	Q7Z692	300 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	LYG1	Q8N1E2	194 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ARFGAP2	Q8N6H7	521 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	SUMF1	Q8NBK3	374 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	OR6T1	Q8NGN1	323 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	FNDC8	Q8TC99	324 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ADGRL4	Q9HBW9	690 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	ESM1	Q9NQ30	184 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	GPR83	Q9NYM4	423 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	RCOR3	Q9P2K3	495 aa	Predicted RBP	2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	P2RX2	Q9UBL9	471 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	FZR1	Q9UM11	496 aa		2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	KLF2	Q9Y5W3	355 aa	Predicted RBP	2.97	□□□□□ -1.93
PTCD3-209	ENST00000472044	IGKV3D-20	A0A0C4DH25	116 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044		A0A0J9YVX5	310 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	RNF222	A6NCQ9	220 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	TRIM49B	A6NDI0	452 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	MFSD2B	A6NFX1	497 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	FBLL1	A6NHQ2	334 aa	Known RBP	2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044		E9PAM4	449 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044		H3BTX0	84 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	PHF1	O43189	567 aa	Predicted RBP	2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	STAM2	O75886	525 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	TRIM16	O95361	564 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ARHGDIA	P52565	204 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	DSCR10	P59022	87 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	MRPS6	P82932	125 aa	Known RBP	2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZNF33B	Q06732	778 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZP4	Q12836	540 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	DPYS	Q14117	519 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	KARS	Q15046	597 aa	Known RBP	2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	LTB4R	Q15722	352 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	SEL1L2	Q5TEA6	688 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	C12orf60	Q5U649	245 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	PRR5L	Q6MZQ0	368 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZNF562	Q6V9R5	426 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	CERS5	Q8N5B7	392 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	BCORP1	Q8N888	145 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	TBCK	Q8TEA7	893 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	AGAP11	Q8TF27	550 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	UBE2Q2	Q8WVN8	375 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ANKRD9	Q96BM1	317 aa	Predicted RBP	2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	C9orf85	Q96MD7	179 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ECT2	Q9H8V3	914 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	NGB	Q9NPG2	151 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	FAM114A2	Q9NRY5	505 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	ACTR3B	Q9P1U1	418 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	RNF115	Q9Y4L5	304 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	FKBP7	Q9Y680	259 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	AGRN	O00468	2067 aa		2.96	□□□□□ -1.94
PTCD3-209	ENST00000472044	POGZ	Q7Z3K3	1410 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	LGALS8	O00214	317 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	PDXK	O00764	312 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	IMPA2	O14732	288 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	ALOX15B	O15296	676 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	SRPX2	O60687	465 aa	Predicted RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	ZNF354A	O60765	605 aa	Predicted RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	PTBP3	O95758	552 aa	Known RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	PIGR	P01833	764 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	WNT2	P09544	360 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	PVR	P15151	417 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	CHRNA3	P32297	505 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	CD86	P42081	329 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	CAMLG	P49069	296 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	STK19	P49842	368 aa	Predicted RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	CSRP3	P50461	194 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	RAG2	P55895	527 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	GMFB	P60983	142 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	PPIA	P62937	165 aa	Known RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	NOP14	P78316	857 aa	Known RBP	2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	HTD2	P86397	168 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	CEBPE	Q15744	281 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	MICA	Q29983	383 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	CNPY1	Q3B7I2	92 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	EIPR1	Q53HC9	387 aa		2.95	□□□□□ -1.94
PTCD3-209	ENST00000472044	MS4A13	Q5J8X5	152 aa		2.95	□□□□□ -1.94

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms