RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SDK1Q7Z5N4 2213 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 ZSCAN9O15535 394 aaPredicted RBP17.93■□□□□ 0.46
VIM-203ENST00000469543 ACSL1P33121 698 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 ETV5P41161 510 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 ETV1P50549 477 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 SNRPGP62308 76 aaKnown RBP17.93■□□□□ 0.46
VIM-203ENST00000469543 SIM1P81133 766 aaPredicted RBP17.93■□□□□ 0.46
VIM-203ENST00000469543 UTS2BQ765I0 119 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 ZNF367Q7RTV3 350 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 POC5Q8NA72 575 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 SLC9A6Q92581 669 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 BARHL1Q9BZE3 327 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 POLR2J2Q9GZM3 115 aaKnown RBP17.93■□□□□ 0.46
VIM-203ENST00000469543 OBP2AQ9NY56 170 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 EHD3Q9NZN3 535 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 KLK4Q9Y5K2 254 aa17.93■□□□□ 0.46
VIM-203ENST00000469543 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.92■□□□□ 0.46
VIM-203ENST00000469543 MPZL2O60487 215 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 SERPINB1P30740 379 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 PDX1P52945 283 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 TMEM35AQ53FP2 167 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 CCNJQ5T5M9 372 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 NATD1Q8N6N6 113 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 OR8D4Q8NGM9 314 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 OR8J1Q8NGP2 316 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 HPS1Q92902 700 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 TMEM80Q96HE8 168 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 FAM46AQ96IP4 442 aaKnown RBP17.92■□□□□ 0.46
VIM-203ENST00000469543 ZNF681Q96N22 645 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 ENTPD4Q9Y227 616 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 SLC9A8Q9Y2E8 581 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 CACNB4O00305 520 aaPredicted RBP17.92■□□□□ 0.46
VIM-203ENST00000469543 CTSVO60911 334 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 CSNK2A2P19784 350 aaPredicted RBP17.92■□□□□ 0.46
VIM-203ENST00000469543 CD79BP40259 229 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 SNAPC1Q16533 368 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 FBXO42Q6P3S6 717 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 C19orf48Q6RUI8 117 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 LINC00299Q6ZSB3 139 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 NKAIN4Q8IVV8 208 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 OR7G2Q8NG99 324 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 OR10G6Q8NH81 332 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 PITHD1Q9GZP4 211 aaPredicted RBP17.92■□□□□ 0.46
VIM-203ENST00000469543 NUAK2Q9H093 628 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 ENOPH1Q9UHY7 261 aa17.92■□□□□ 0.46
VIM-203ENST00000469543 EGFP01133 1207 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 S100A5P33763 92 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 MPIP34949 423 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 PCYT1AP49585 367 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 KHKP50053 298 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 RAB15P59190 212 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 TAS2R41P59536 307 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 MFSD4BQ5TF39 518 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 B3GLCTQ6Y288 498 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 PRSS41Q7RTY9 318 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 RASSF5Q8WWW0 418 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 SLC35A4Q96G79 324 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 INIPQ9NRY2 104 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 SNTG1Q9NSN8 517 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 VPS13AQ96RL7 3174 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 LOC105369274A0A096LPK9 316 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 LOC102723532A0A0G2JNH3 316 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 GPR89AB7ZAQ6 455 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 PLD2O14939 933 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 RGS5O15539 181 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 P2RX6O15547 441 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 OXSR1O95747 527 aaPredicted RBP17.91■□□□□ 0.46
VIM-203ENST00000469543 SCG5P05408 212 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 GPR89BP0CG08 455 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 CSTF2P33240 577 aaKnown RBP eCLIP17.91■□□□□ 0.46
VIM-203ENST00000469543 TRA2BP62995 288 aaKnown RBP17.91■□□□□ 0.46
VIM-203ENST00000469543 TEKQ02763 1124 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 TGM3Q08188 693 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 ZMAT1Q5H9K5 638 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 ZNF425Q6IV72 752 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 OR4N4Q8N0Y3 316 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 KBTBD8Q8NFY9 601 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 TTLQ8NG68 377 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 ASPNQ9BXN1 380 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 NXF2Q9GZY0 626 aaKnown RBP17.91■□□□□ 0.46
VIM-203ENST00000469543 GIN1Q9NXP7 522 aa17.91■□□□□ 0.46
VIM-203ENST00000469543 THY1P04216 161 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 EIF2S1P05198 315 aaKnown RBP17.9■□□□□ 0.46
VIM-203ENST00000469543 FHP07954 510 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 ACTR1BP42025 376 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 ACTR1AP61163 376 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 SPATC1Q76KD6 591 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 ZFP41Q8N8Y5 198 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 MTIF3Q9H2K0 278 aaKnown RBP17.9■□□□□ 0.46
VIM-203ENST00000469543 NKX2-4Q9H2Z4 354 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 MRPS2Q9Y399 296 aaKnown RBP17.9■□□□□ 0.46
VIM-203ENST00000469543 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 KLF8O95600 359 aaPredicted RBP17.9■□□□□ 0.46
VIM-203ENST00000469543 HOXB2P14652 356 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 PVRP15151 417 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 NTSR1P30989 418 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 CRYBB2P43320 205 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 GSTM5P46439 218 aa17.9■□□□□ 0.46
VIM-203ENST00000469543 EIF2B2P49770 351 aaKnown RBP17.9■□□□□ 0.46
VIM-203ENST00000469543 ALDH6A1Q02252 535 aaKnown RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms