RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PTGDSP41222 190 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 HTR6P50406 440 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ASCL1P50553 236 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 PKNOX1P55347 436 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 WNT3P56703 355 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 RAE1P78406 368 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 MRPS35P82673 323 aaKnown RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 LCP2Q13094 533 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 FBXL19-AS1Q494R0 122 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 SPIN4Q56A73 249 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ZNF628Q5EBL2 1059 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 IFT20Q8IY31 132 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 SAMD14Q8IZD0 417 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 CNPY4Q8N129 248 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 FAM83FQ8NEG4 500 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ABTB1Q969K4 478 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ERP27Q96DN0 273 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 LRRC46Q96FV0 321 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 WDYHV1Q96HA8 205 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 KLRF1Q9NZS2 232 aa15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 ZNF629Q9UEG4 869 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 GPR55Q9Y2T6 319 aaPredicted RBP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 NIPBLQ6KC79 2804 aaeCLIP15.12■□□□□ 0.01
CCDC28B-204ENST00000469003 GNG14A0A1W2PPG7 69 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 PRAMEF25A6NGN4 478 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 CD8B2A6NJW9 211 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 ACTL6AO96019 429 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 UQCRC1P31930 480 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 KIR2DL3P43628 341 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 NAGLUP54802 743 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 ACSM2AQ08AH3 577 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 DCST1Q5T197 706 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 ACSM2BQ68CK6 577 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 POMZP3Q6PJE2 187 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 YRDCQ86U90 279 aaKnown RBP15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 ZZZ3Q8IYH5 903 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 CCDC116Q8IYX3 515 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 CEP112Q8N8E3 955 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 C16orf78Q8WTQ4 265 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 EXOSC8Q96B26 276 aaKnown RBP15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 APIPQ96GX9 242 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 POM121Q96HA1 1249 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 BTBD9Q96Q07 612 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 SH3GL2Q99962 352 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 CALHM2Q9HA72 323 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 GALNT9Q9HCQ5 603 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 EHD3Q9NZN3 535 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 PSMC3IPQ9P2W1 217 aaPredicted RBP15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 EXO1Q9UQ84 846 aaKnown RBP15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 KIAA1549Q9HCM3 1950 aa15.11■□□□□ 0.01
CCDC28B-204ENST00000469003 SERTM1A2A2V5 107 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 CCDC151A5D8V7 595 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 C2orf72A6NCS6 295 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 MBD3L4A6NDZ8 208 aaPredicted RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 MBD3L3A6NE82 208 aaPredicted RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 OR6C70A6NIJ9 312 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 MBD3L5A6NJ08 208 aaPredicted RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 GOLGA8RI6L899 631 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 ABCB7O75027 752 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 CTAG2O75638 210 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 TIA1P31483 386 aaKnown RBP eCLIP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 GCKP35557 465 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 ZNF136P52737 540 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 HMGCS1Q01581 520 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 HEPACAMQ14CZ8 416 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 GALNT18Q6P9A2 607 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 OR9A2Q8NGT5 310 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 MBD3L2Q8NHZ7 208 aaPredicted RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 KIF18AQ8NI77 898 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 ZPLD1Q8TCW7 415 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 KAT2AQ92830 837 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 RNASE6Q93091 150 aaKnown RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 TMBIM1Q969X1 311 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 TMCO6Q96DC7 493 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 C11orf24Q96F05 449 aaPredicted RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 SLC35A4Q96G79 324 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 COL21A1Q96P44 957 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 TRIB1Q96RU8 372 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 TXLNGYQ9BZA5 131 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 SHCBP1LQ9BZQ2 653 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 OR2B2Q9GZK3 357 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 SERHLQ9NQF3 203 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 GIMAP4Q9NUV9 329 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 SIRT5Q9NXA8 310 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 DNAJB12Q9NXW2 375 aaKnown RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 FOXD3Q9UJU5 478 aaPredicted RBP15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 MAPRE3Q9UPY8 281 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 TIMM22Q9Y584 194 aa15.1■□□□□ 0.01
CCDC28B-204ENST00000469003 REM1O75628 298 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 CBR3O75828 277 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 CT45A8P0DMV1 189 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 CT45A9P0DMV2 189 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 PYGBP11216 843 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 CD1EP15812 388 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 DNAJA1P31689 397 aaKnown RBP15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 GSTM5P46439 218 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 PSPHP78330 225 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 SNTB1Q13884 538 aaKnown RBP15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 RCAN2Q14206 197 aa15.09■□□□□ 0.01
CCDC28B-204ENST00000469003 SLC29A2Q14542 456 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms