RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-209	ENST00000468872	ZNF440	Q8IYI8	595 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	ZNF491	Q8N8L2	437 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	OR52B4	Q8NGK2	314 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	RSPH1	Q8WYR4	309 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	MCHR2	Q969V1	340 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	NCLN	Q969V3	563 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	CPXM1	Q96SM3	734 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	TRIM15	Q9C019	465 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	ECT2	Q9H8V3	914 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	JPT2	Q9H910	190 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	SP140L	Q9H930	580 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	ACTR8	Q9H981	624 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	LIN28A	Q9H9Z2	209 aa	Known RBP	4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	GTSE1	Q9NYZ3	720 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	EMCN	Q9ULC0	261 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	ZNF490	Q9ULM2	529 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	ABCC4	O15439	1325 aa		4.09	□□□□□ -1.75
LSM5-209	ENST00000468872	IGHV3-16	A0A0C4DH30	117 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872		A0A1W2PPR1	153 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	RPL37AP8	A6NKH3	93 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872		E9PQ18	207 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872		K7ERI5	159 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	CYB561D2	O14569	222 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	CFLAR	O15519	480 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	C3	P01024	1663 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	PTPN6	P29350	595 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	RAG2	P55895	527 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	ACY1	Q03154	408 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	SLC1A5	Q15758	541 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	DNAJC21	Q5F1R6	531 aa	Known RBP	4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	C9orf66	Q5T8R8	295 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	PAQR6	Q6TCH4	344 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	MOB2	Q70IA6	237 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	RANBP3L	Q86VV4	465 aa	Predicted RBP	4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	GPBP1	Q86WP2	473 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	CERS5	Q8N5B7	392 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	BCORP1	Q8N888	145 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	ZBTB44	Q8NCP5	570 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	WDR36	Q8NI36	951 aa	Known RBP	4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	BIRC7	Q96CA5	298 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	NTNG2	Q96CW9	530 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	RAB3C	Q96E17	227 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	RBM4B	Q9BQ04	359 aa	Known RBP	4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	GPR174	Q9BXC1	333 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	ALG9	Q9H6U8	611 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	YAE1D1	Q9NRH1	226 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	SEC14L4	Q9UDX3	406 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	AURKC	Q9UQB9	309 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	CPQ	Q9Y646	472 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	PRSS21	Q9Y6M0	314 aa		4.08	□□□□□ -1.76
LSM5-209	ENST00000468872	STRCP1	A6NGW2	1772 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	NEURL4	Q96JN8	1562 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	UHRF1BP1L	A0JNW5	1464 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	NCAPD2	Q15021	1401 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ATP10D	Q9P241	1426 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872		H3BMH7	237 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872		K7EPI3	171 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	LGALS8	O00214	317 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	PI15	O43692	258 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	LANCL1	O43813	399 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	RANBP6	O60518	1105 aa	Known RBP	4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	SMPD2	O60906	423 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	FCGR3A	P08637	254 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	CALML3	P27482	149 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	RFTN1	Q14699	578 aa	Predicted RBP	4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	LPAL2	Q16609	132 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	PCK2	Q16822	640 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	SNAI3	Q3KNW1	292 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ANKRD55	Q3KP44	614 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ADPRM	Q3LIE5	342 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	FAM182A	Q5T1J6	154 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	EMB	Q6PCB8	327 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ATRAID	Q6UW56	229 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ADAMTSL5	Q6ZMM2	481 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	GPRIN3	Q6ZVF9	776 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	PAQR9	Q6ZVX9	377 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ARFGAP2	Q8N6H7	521 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	C4orf32	Q8N8J7	132 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	OR4F17	Q8NGA8	305 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	SELENOM	Q8WWX9	145 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	OR4F4	Q96R69	305 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	WRAP53	Q9BUR4	548 aa	Known RBP	4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	APOO	Q9BUR5	198 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	LRRCC1	Q9C099	1032 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	HEXA-AS1	Q9H8Q6	139 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ADGRL4	Q9HBW9	690 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	ANKMY1	Q9P2S6	941 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	P2RX2	Q9UBL9	471 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	FZR1	Q9UM11	496 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	SLC9A8	Q9Y2E8	581 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	MOB4	Q9Y3A3	225 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	PHLPP1	O60346	1717 aa		4.07	□□□□□ -1.76
LSM5-209	ENST00000468872	COL16A1	Q07092	1604 aa	Predicted RBP	4.06	□□□□□ -1.76
LSM5-209	ENST00000468872	ZCCHC11	Q5TAX3	1644 aa	Known RBP	4.06	□□□□□ -1.76
LSM5-209	ENST00000468872	CACNA1G	O43497	2377 aa		4.06	□□□□□ -1.76
LSM5-209	ENST00000468872		A0A0U1RQV5	110 aa		4.06	□□□□□ -1.76
LSM5-209	ENST00000468872	FAM230A	A0A1W2PPH8	454 aa		4.06	□□□□□ -1.76
LSM5-209	ENST00000468872	RNF222	A6NCQ9	220 aa		4.06	□□□□□ -1.76
LSM5-209	ENST00000468872		E9PMD0	336 aa		4.06	□□□□□ -1.76
LSM5-209	ENST00000468872	SGK494	L7N484	410 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 67 ms