RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ACTL6AO96019 429 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 ANXA4P09525 319 aaPredicted RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 MYL2P10916 166 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 BMP7P18075 431 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 DRD5P21918 477 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 TIA1P31483 386 aaKnown RBP eCLIP16■□□□□ 0.15
COL7A1-206ENST00000466591 MRPS22P82650 360 aaKnown RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 HMGCS1Q01581 520 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 SRYQ05066 204 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 ZNF155Q12901 538 aaPredicted RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 SNTA1Q13424 505 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 EFR3AQ14156 821 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 SH2D4BQ5SQS7 431 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 VASNQ6EMK4 673 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 SCIMPQ6UWF3 145 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 IFNEQ86WN2 208 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 KIF18BQ86Y91 864 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 FAM9CQ8IZT9 166 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 KAT2AQ92830 837 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 RNASE6Q93091 150 aaKnown RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 RMND5BQ96G75 393 aaPredicted RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 NODALQ96S42 347 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 UGT2B28Q9BY64 529 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 ACPTQ9BZG2 426 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 PRDM14Q9GZV8 571 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 ZNF629Q9UEG4 869 aaPredicted RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 FOXD3Q9UJU5 478 aaPredicted RBP16■□□□□ 0.15
COL7A1-206ENST00000466591 TIMM22Q9Y584 194 aa16■□□□□ 0.15
COL7A1-206ENST00000466591 INTS1Q8N201 2190 aaKnown RBP15.99■□□□□ 0.15
COL7A1-206ENST00000466591 SNPHO15079 494 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 UGT2B11O75310 529 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 GLRA3O75311 464 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 ERN1O75460 977 aaKnown RBP15.99■□□□□ 0.15
COL7A1-206ENST00000466591 CBR3O75828 277 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 CBX7O95931 251 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 SBK3P0C264 359 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 S1PR1P21453 382 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 TCEA1P23193 301 aaKnown RBP15.99■□□□□ 0.15
COL7A1-206ENST00000466591 PTPN6P29350 595 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 OPRM1P35372 400 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 TIMP3P35625 211 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 CPA2P48052 419 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 PRKAA2P54646 552 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 PSPHP78330 225 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 AAGABQ6PD74 315 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 CHMP1BQ7LBR1 199 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 C16orf78Q8WTQ4 265 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 TRIM44Q96DX7 344 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-206ENST00000466591 ADOQ96SZ5 270 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 CLEC4MQ9H2X3 399 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-206ENST00000466591 EPB41L4BQ9H329 900 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 UBQLN3Q9H347 655 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 SLC35C2Q9NQQ7 365 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 TAS2R9Q9NYW1 312 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 HEY2Q9UBP5 337 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 NINQ8N4C6 2090 aa15.99■□□□□ 0.15
COL7A1-206ENST00000466591 OR6C70A6NIJ9 312 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 SMIM23A6NLE4 172 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 COQ9O75208 318 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 CHN1P15882 459 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 NTSP30990 170 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 FBN2P35556 2912 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 GSTM5P46439 218 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 DLX5P56178 289 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 C2orf80Q0P641 193 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 MGAT2Q10469 447 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 SLC29A2Q14542 456 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 FLYWCH1Q4VC44 716 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 ZNF628Q5EBL2 1059 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 NSUN5P2Q63ZY6 315 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 DESI1Q6ICB0 168 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 LARP4Q71RC2 724 aaKnown RBP eCLIP15.98■□□□□ 0.15
COL7A1-206ENST00000466591 OR4K17Q8NGC6 315 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 ZNF675Q8TD23 568 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 UBLCP1Q8WVY7 318 aaPredicted RBP15.98■□□□□ 0.15
COL7A1-206ENST00000466591 ERP27Q96DN0 273 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 L3HYPDHQ96EM0 354 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 APIPQ96GX9 242 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 SFXN2Q96NB2 322 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 KCNA7Q96RP8 456 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 GPATCH1Q9BRR8 931 aaKnown RBP15.98■□□□□ 0.15
COL7A1-206ENST00000466591 SHCBP1LQ9BZQ2 653 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 TAS2R10Q9NYW0 307 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 CRIM1Q9NZV1 1036 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 ZNF639Q9UID6 485 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 ZNF225Q9UK10 706 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 EXO1Q9UQ84 846 aaKnown RBP15.98■□□□□ 0.15
COL7A1-206ENST00000466591 NCKAP5O14513 1909 aa15.98■□□□□ 0.15
COL7A1-206ENST00000466591 TUBAL3A6NHL2 446 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 CD8B2A6NJW9 211 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 SYT5O00445 386 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 TMIGD3P0DMS9 266 aaPredicted RBP15.97■□□□□ 0.15
COL7A1-206ENST00000466591 CTSSP25774 331 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 CCT5P48643 541 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 CLK3P49761 638 aaKnown RBP15.97■□□□□ 0.15
COL7A1-206ENST00000466591 EMDP50402 254 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 HTR6P50406 440 aa15.97■□□□□ 0.15
COL7A1-206ENST00000466591 NCBP2P52298 156 aaKnown RBP eCLIP15.97■□□□□ 0.15
COL7A1-206ENST00000466591 AGFG1P52594 562 aaKnown RBP15.97■□□□□ 0.15
COL7A1-206ENST00000466591 NAGLUP54802 743 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms