RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ING3Q9NXR8 418 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 HCN2Q9UL51 889 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 NTNG1Q9Y2I2 539 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 LSM2Q9Y333 95 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 WNT6Q9Y6F9 365 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 TRANK1O15050 2925 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ZC3H12DA2A288 527 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 E9PQ18 207 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 FABP7O15540 132 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 MPZL2O60487 215 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PDE9AO76083 593 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 POU2F2P09086 479 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 NPPBP16860 134 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ALAS2P22557 587 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PSMB5P28074 263 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 METAP1P53582 386 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 LIMK1P53667 647 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 MAPK12P53778 367 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 RHAGQ02094 409 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 GAB4Q2WGN9 574 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF750Q32MQ0 723 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 LIPIQ6XZB0 460 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 CAMKMTQ7Z624 323 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ZER1Q7Z7L7 766 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 NATD1Q8N6N6 113 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 OR4M2Q8NGB6 313 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 OR4M1Q8NGD0 313 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 AP2M1Q96CW1 435 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 METTL2AQ96IZ6 378 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 TRMT61BQ9BVS5 477 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 IL36AQ9UHA7 158 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 MAPRE3Q9UPY8 281 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 GSTK1Q9Y2Q3 226 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 C2orf16Q68DN1 1984 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 CPSF4LA6NMK7 179 aaKnown RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 INMT-MINDY4F8WBC2 141 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 TEX46H3BTG2 121 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 I3L521 148 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 K7ESM1 405 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ARAFP10398 606 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 GIPRP48546 466 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SMSP52788 366 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 NTHL1P78549 312 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 MESP2Q0VG99 397 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 POU4F3Q15319 338 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ZSWIM7Q19AV6 140 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 HIST2H2AA3Q6FI13 130 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 C12orf40Q86WS4 652 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 FBXO15Q8NCQ5 510 aaPredicted RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SPPL3Q8TCT6 385 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 PIGKQ92643 395 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 GLYATL1Q969I3 302 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF707Q96C28 371 aaPredicted RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 TIFAQ96CG3 184 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 RSPRY1Q96DX4 576 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SAP130Q9H0E3 1048 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SLC25A19Q9HC21 320 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 THSD1Q9NS62 852 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 NPAP1Q9NZP6 1156 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ASF1AQ9Y294 204 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SHISA3A0PJX4 238 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 RAB36O95755 333 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ASAH1Q13510 395 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SIGIRRQ6IA17 410 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 PARS2Q7L3T8 475 aaKnown RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 LRRTM4Q86VH4 590 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 KLBQ86Z14 1044 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 CCDC28AQ8IWP9 274 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ETFBKMTQ8IXQ9 262 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 PROKR2Q8NFJ6 384 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 VN1R2Q8NFZ6 395 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF582Q96NG8 517 aaPredicted RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 BHLHE41Q9C0J9 482 aaPredicted RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 EPHX3Q9H6B9 360 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 NARFLQ9H6Q4 476 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 DMRT3Q9NQL9 472 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 ZFR2Q9UPR6 939 aaKnown RBP11.72□□□□□ -0.53
HDAC4-208ENST00000463007 TRAPPC4Q9Y296 219 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 INSL6Q9Y581 213 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 CSNK1G3Q9Y6M4 447 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 SDK1Q7Z5N4 2213 aa11.72□□□□□ -0.53
HDAC4-208ENST00000463007 LANCL1O43813 399 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 ATG13O75143 517 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 SRPRAP08240 638 aaKnown RBP11.71□□□□□ -0.53
HDAC4-208ENST00000463007 ARSBP15848 533 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF267Q14586 743 aaPredicted RBP11.71□□□□□ -0.53
HDAC4-208ENST00000463007 PLPP4Q5VZY2 271 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF770Q6IQ21 691 aaPredicted RBP11.71□□□□□ -0.53
HDAC4-208ENST00000463007 VN1R5Q7Z5H4 357 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 OR6T1Q8NGN1 323 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 WDR34Q96EX3 536 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 ZFP3Q96NJ6 502 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 TREX2Q9BQ50 279 aaPredicted RBP11.71□□□□□ -0.53
HDAC4-208ENST00000463007 BRF2Q9HAW0 419 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 EVA1BQ9NVM1 165 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 MRPL15Q9P015 296 aaKnown RBP11.71□□□□□ -0.53
HDAC4-208ENST00000463007 PTGFRNQ9P2B2 879 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 SLC27A6Q9Y2P4 619 aa11.71□□□□□ -0.53
HDAC4-208ENST00000463007 HEATR5BQ9P2D3 2071 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms